Jatropha Genome Database

JcCB0381561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0381561.10 - phase: 0 /partial
         (163 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29657.m000468 biotin synthase, putative                               283   3e-77

>29657.m000468 biotin synthase, putative
          Length = 375

 Score =  283 bits (724), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/163 (82%), Positives = 139/163 (85%), Gaps = 6/163 (3%)

Query: 1   MFSVRSIFRPQQLRXXXXXXXXXXXXXXXXXXXTQAERTIKEGPRNDWTRHEIKDVYDSP 60
           MFSVRSIFRPQQLR                    QAERTIKEGPRNDWTR EIK+VYDSP
Sbjct: 1   MFSVRSIFRPQQLRPSFVFSYSSSAAA------IQAERTIKEGPRNDWTRQEIKNVYDSP 54

Query: 61  LLDLLFHGAQVHRHAQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYKTGLKAQKLMTKD 120
           LLDLLFHGAQVHRH QNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGLKAQKLMTKD
Sbjct: 55  LLDLLFHGAQVHRHFQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQKLMTKD 114

Query: 121 DVMEAAKRAKEAGSTRFCMGAAWRDTVGRNTNFNQILDYVKEI 163
           DV++AAKRAKEAGSTRFCMGAAWRDT+GR TNFNQILDYVKEI
Sbjct: 115 DVLQAAKRAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEI 157