Jatropha Genome Database

JcCB0379211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0379211.10 - phase: 0 /partial
         (179 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010889 coatomer gamma subunit, putative                        362   e-101

>30190.m010889 coatomer gamma subunit, putative
          Length = 887

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/179 (98%), Positives = 177/179 (98%)

Query: 1   PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 60
           PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS
Sbjct: 155 PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214

Query: 61  KLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGANTQTGDRPFYDFLEGCLRHKAEMVIFE 120
           KLVTSLTRGTVRSPLAQCLLIRYTSQVIRES  NTQTGDRPFYDFLEGCLRHKAEMVIFE
Sbjct: 215 KLVTSLTRGTVRSPLAQCLLIRYTSQVIRESATNTQTGDRPFYDFLEGCLRHKAEMVIFE 274

Query: 121 AARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 179
           AARAITEL+GVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID
Sbjct: 275 AARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 333