Jatropha Genome Database

JcCB0376261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0376261.10 + phase: 1 /partial
         (203 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27940.m000340 transcription factor, putative                          235   9e-63

>27940.m000340 transcription factor, putative
          Length = 209

 Score =  235 bits (600), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 126/147 (85%), Gaps = 2/147 (1%)

Query: 1   LPGFTRSVYKSDHALITPESHVFSPLP--TNTLGAYLITPAMGSHFVMYLAKMQGKSRSE 58
           LPGFTRSVYK DHALITPESHVFSPLP  TNTLGAYLITPAMGSHFVMYLAKMQG+SRS 
Sbjct: 44  LPGFTRSVYKRDHALITPESHVFSPLPEWTNTLGAYLITPAMGSHFVMYLAKMQGQSRSG 103

Query: 59  LPPYDVERFIFMVQGXXXXXXXXXXXHELMVDSYAYLPPNFKHSLECDAFATLVVFERRY 118
            PP+ VERFIFMVQG           ++LMVDSYAYLPPN +HS+E DA ATL +FERRY
Sbjct: 104 PPPHGVERFIFMVQGYATLTNASGFIYKLMVDSYAYLPPNSEHSVESDASATLAIFERRY 163

Query: 119 ASLDDLITEQIVGSTDKQPLLETPGEV 145
           ASLD+LITEQIVGSTDKQPLLETPGE+
Sbjct: 164 ASLDNLITEQIVGSTDKQPLLETPGEI 190