Jatropha Genome Database

JcCB0376161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0376161.10 + phase: 1 /pseudo/partial
         (180 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29776.m000489 UDP-glucose 4-epimerase, putative                       356   4e-99
29724.m000863 UDP-glucose 4-epimerase, putative                       204   2e-53
30190.m010846 UDP-glucose 4-epimerase, putative                       117   4e-27
30190.m011159 UDP-glucose 4-epimerase, putative                       103   3e-23

>29776.m000489 UDP-glucose 4-epimerase, putative
          Length = 417

 Score =  356 bits (913), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 165/175 (94%), Positives = 173/175 (98%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           MI RYFNVIGSDP+GRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC
Sbjct: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 302

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVGIYNVGTGKGRSVNEFVEACKKATGVNIKVDYLP 125
           IRDYIDVTDLVDAHVKALE+A+P KVGIYNVGTGKGRSVNEFVEACKKATGV+IKVDYLP
Sbjct: 303 IRDYIDVTDLVDAHVKALEKAMPGKVGIYNVGTGKGRSVNEFVEACKKATGVDIKVDYLP 362

Query: 126 RRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSPLVMAS 180
           RRPGDYAEV+SDPTKIR+ELNWTAQHTDLQESLQ+AWRWQK+HRNGYGSPLVMAS
Sbjct: 363 RRPGDYAEVYSDPTKIRVELNWTAQHTDLQESLQVAWRWQKAHRNGYGSPLVMAS 417


>29724.m000863 UDP-glucose 4-epimerase, putative
          Length = 295

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 118/144 (81%), Gaps = 3/144 (2%)

Query: 6   MISRY-FNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGT 64
           MI RY FNVIGSDP+  LGE+PRP L EHGRISGACFDAARGII GLK++GTDYKT DGT
Sbjct: 152 MILRYIFNVIGSDPEEHLGESPRPALCEHGRISGACFDAARGIIPGLKIRGTDYKTADGT 211

Query: 65  CIRDYIDVTDLVDAHVKALERALPRKVGIYN--VGTGKGRSVNEFVEACKKATGVNIKVD 122
           C RD ID+TDLV+AH+KAL  A P K+ + +    + + RSV EFVEACKKATGVNIKVD
Sbjct: 212 CERDRIDITDLVNAHMKALAHAKPAKLLLDHDTFLSSRCRSVKEFVEACKKATGVNIKVD 271

Query: 123 YLPRRPGDYAEVFSDPTKIRLELN 146
           YL R PGDYAEV+SDP+KIR ELN
Sbjct: 272 YLSRWPGDYAEVYSDPSKIRRELN 295


>30190.m010846 UDP-glucose 4-epimerase, putative
          Length = 297

 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           ++ RYFN +G+ P G +GE PR        +       A G    L V GTDY T DGT 
Sbjct: 126 ILLRYFNPVGAHPSGHIGEDPR---GIPNNLMPYVQQVAVGRRPHLTVFGTDYSTKDGTG 182

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIKVDY 123
           +RDYI V DL D H+ AL +    K+G  +YN+GTGKG SV E V A +KA+G  I +  
Sbjct: 183 VRDYIHVIDLADGHIAALRKLSDAKIGCEVYNLGTGKGTSVLEMVTAFEKASGKKIPLVM 242

Query: 124 LPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGS 174
             RRPGD   V++   K   ELNW A+   + E  +  W W   +  GYGS
Sbjct: 243 AGRRPGDAEIVYASTDKAERELNWKAKF-GIDEMCRDQWNWASKNPYGYGS 292


>30190.m011159 UDP-glucose 4-epimerase, putative
          Length = 218

 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           ++ RYFN +G+   G+LGE P+        +       A G +  L V G DY T D T 
Sbjct: 49  ILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDSTA 105

Query: 66  IRDYIDVTDLVDAHVKALERAL-PRKVGI--YNVGTGKGRSVNEFVEACKKATGVNIKVD 122
           IRDYI V DL D H+ AL + L    +G   YN+GTG+G SV + V A +KA G  I   
Sbjct: 106 IRDYIHVMDLADGHIAALRKLLTAENIGCIAYNLGTGRGTSVLQMVAAFEKACGKKIPYK 165

Query: 123 YLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGY 172
             PRR GD   V++   K   EL W A++  ++E  +  W W   +  GY
Sbjct: 166 LCPRRAGDATAVYASTEKAERELGWKAKY-GIEEMCRDQWNWASKNPWGY 214