Jatropha Genome Database

JcCB0375141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375141.10 - phase: 0 /pseudo/partial
         (241 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008782 DNA polymerase zeta catalytic subunit, putative         406   e-114
30156.m001758 DNA polymerase delta catalytic subunit, putative        123   8e-29
30115.m001231 DNA polymerase alpha catalytic subunit, putative         64   8e-11

>30128.m008782 DNA polymerase zeta catalytic subunit, putative
          Length = 2066

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/210 (91%), Positives = 205/210 (97%)

Query: 24  QVRKGVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAG 83
           +VRKGVLPRLLEEILSTRIMVKQAMKKLAPT+ VLHRIFNARQLALKLIANVTYGYTAAG
Sbjct: 728 KVRKGVLPRLLEEILSTRIMVKQAMKKLAPTQQVLHRIFNARQLALKLIANVTYGYTAAG 787

Query: 84  FSGRMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFVLLKGRTVKESF 143
           FSGRMPCAELADSIVQCGRSTLEKAISLVNA+DKWNA+VIYGDTDSMFVLLKGRTV+ESF
Sbjct: 788 FSGRMPCAELADSIVQCGRSTLEKAISLVNASDKWNARVIYGDTDSMFVLLKGRTVEESF 847

Query: 144 QIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVFDAKGIETV 203
           QIG EIASAVTAMNP+PVTLKLEKVYHPCFLLTKKRYVGYSYE+ADQ EPVFDAKGIETV
Sbjct: 848 QIGREIASAVTAMNPDPVTLKLEKVYHPCFLLTKKRYVGYSYESADQTEPVFDAKGIETV 907

Query: 204 RRDTCGAVAKMMEQSLRLFLEHQNMSEVEA 233
           RRDTCGAVAKM+EQSLRLF EHQ++SE++ 
Sbjct: 908 RRDTCGAVAKMLEQSLRLFFEHQDISEIKG 937


>30156.m001758 DNA polymerase delta catalytic subunit, putative
          Length = 1049

 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 108/184 (58%), Gaps = 16/184 (8%)

Query: 25  VRKGVLPRLLEEILSTRIMVKQAMKKLA-PTELVLHRIFNARQLALKLIANVTYGYTAAG 83
           ++KG+LP +LEE+L+ R   K  +K+   P E     + + RQLALK+ AN  YG+T A 
Sbjct: 576 LQKGILPEILEELLAARRRAKADLKEAKDPLE---KAVLDGRQLALKVSANSVYGFTGAT 632

Query: 84  FSGRMPCAELADSIVQCGRSTLEKAISLVNANDKW--------NAKVIYGDTDSMFVLLK 135
             G++PC E++ S+   GR  +E    LV   DK+        NA+VIYGDTDS+ V   
Sbjct: 633 V-GQLPCLEISSSVTSYGRQMIEHTKKLVE--DKFTIMGGYEHNAEVIYGDTDSVMVQFG 689

Query: 136 GRTVKESFQIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVF 195
             TV E+ ++G E A  ++     P+ L+ EKVY+P  L++KKRY G  + N+D+ + + 
Sbjct: 690 VPTVPEAMKLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNSDKFDKM- 748

Query: 196 DAKG 199
           D KG
Sbjct: 749 DTKG 752


>30115.m001231 DNA polymerase alpha catalytic subunit, putative
          Length = 1526

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 28   GVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAGFSG- 86
            GVLP LL+ ++  R MVK  MK  +  ++   +  + +Q ALKL AN  YG    GFS  
Sbjct: 955  GVLPELLKNLVERRRMVKSWMKNASGLKV---QQLDIQQQALKLTANSMYG--CLGFSNS 1009

Query: 87   RMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFVLLKGRTVKESFQIG 146
            R     LA+ I   GR  L+  + LV  N   N +VIYGDTDS+ +      + ++  I 
Sbjct: 1010 RFYAKPLAELITLQGREILQSTVDLVQNN--LNLEVIYGDTDSIMIYSGLEDITKAKAIA 1067

Query: 147  NEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIE-PVFDAKGIETVRR 205
             ++   V       + + L+ +Y    LL KK+Y     +  D     V + KG++ VRR
Sbjct: 1068 GKVIQEVNKKY-RCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRR 1126

Query: 206  D 206
            D
Sbjct: 1127 D 1127