Jatropha Genome Database

JcCB0375071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375071.10 + phase: 2 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014078 similarity to nuclear protein zap, putative             186   2e-48

>30147.m014078 similarity to nuclear protein zap, putative
          Length = 676

 Score =  186 bits (473), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/90 (93%), Positives = 87/90 (96%)

Query: 16  IVLVDDRNLRVADFAQFWAIAKRSGYEVYISEATYKDPVGCAARNVHGFTLDEIKSMAEQ 75
           +V+VDDRNLRVADFAQFWAIAKRSGYEVYISEATYKDP GCAARNVHGFTLDEIKSMA Q
Sbjct: 399 LVIVDDRNLRVADFAQFWAIAKRSGYEVYISEATYKDPAGCAARNVHGFTLDEIKSMAGQ 458

Query: 76  WEEAPVLYLQLDIKSLFHGDDLKESGIQEV 105
           WEEAP LYLQLDIKSLFHGDDLKESGIQE+
Sbjct: 459 WEEAPTLYLQLDIKSLFHGDDLKESGIQEI 488