Jatropha Genome Database

JcCB0374611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374611.10 - phase: 1 /pseudo
         (114 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29970.m000990 chromatin binding protein, putative                     114   1e-26
30170.m013695 chromatin binding protein, putative                      84   2e-17

>29970.m000990 chromatin binding protein, putative
          Length = 318

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 61/86 (70%)

Query: 24  GWHTDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGI 83
           G  TDSIGEILKGIRCYFDKALPVMLLYKKER QY  +VEND SPSTIYGAEHLLRLF  
Sbjct: 203 GMMTDSIGEILKGIRCYFDKALPVMLLYKKERHQYDDAVENDASPSTIYGAEHLLRLFVK 262

Query: 84  LITLMLCFCFFEQGRVTVQSSFLRIL 109
           L  L+      E+    +Q   L  L
Sbjct: 263 LPELLAYVNIEEETLARLQQKLLDFL 288


>30170.m013695 chromatin binding protein, putative
          Length = 341

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 27  TDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILIT 86
           ++++GEI+KG+  YF+KAL VMLLYK ER+QY  ++++D SPST+YGAEHLLRLF  L  
Sbjct: 213 SEAVGEIIKGLCWYFNKALVVMLLYKSEREQYTDAIKDDVSPSTVYGAEHLLRLFVKLPE 272

Query: 87  LMLCFCFFEQGRVTVQSSFL 106
           L++     ++  + +Q   L
Sbjct: 273 LLIYANIEDETLMELQQDML 292