Jatropha Genome Database

JcCB0374481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374481.10 - phase: 0 /partial
         (146 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29907.m000629 conserved hypothetical protein                          252   5e-68
30170.m014059 conserved hypothetical protein                          162   6e-41
29903.m000183 conserved hypothetical protein                           53   5e-08
30147.m014487 conserved hypothetical protein                           49   8e-07
34735.m000048 conserved hypothetical protein                           45   1e-05

>29907.m000629 conserved hypothetical protein
          Length = 206

 Score =  252 bits (643), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 128/146 (87%)

Query: 1   LKAKGKGADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKI 60
           LK KGK ADGSWLWCTT+DTVYDAVKSMTHHNVGALVVVKPGEQKS+AGIITERDYLRKI
Sbjct: 61  LKGKGKSADGSWLWCTTEDTVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKI 120

Query: 61  IVQGRSSKSTKVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
           IVQGRSSKSTKVGDIMTEENKLITVTP+TKVL+AMQLMTDNRIRHIPVINDK+M+GM+SI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKDMVGMLSI 180

Query: 121 GDXXXXXXXXXXXXXXXXNAYIQGGY 146
           GD                NAYIQGGY
Sbjct: 181 GDVVRAVVAEHREELERLNAYIQGGY 206


>30170.m014059 conserved hypothetical protein
          Length = 205

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 105/146 (71%), Gaps = 2/146 (1%)

Query: 1   LKAKGKGADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKI 60
           L  KG    GSWLWC ++DTVYDAVK+M  +N+G+L+V+KPGE K LAGIITERDYLRK+
Sbjct: 61  LMTKGDEKTGSWLWCHSNDTVYDAVKNMAENNIGSLLVLKPGE-KHLAGIITERDYLRKV 119

Query: 61  IVQGRSSKSTKVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
           I +GRS   T+V +IMT+EN+L+TVT +T +L+AMQLMTD+ IRH+PVI D  ++GM+S+
Sbjct: 120 IAEGRSCHYTRVAEIMTDENRLVTVTSDTTILRAMQLMTDHHIRHVPVI-DGRIVGMISM 178

Query: 121 GDXXXXXXXXXXXXXXXXNAYIQGGY 146
            D                N +I+G Y
Sbjct: 179 VDVVRAVVEQQSGELKQLNDFIRGEY 204


>29903.m000183 conserved hypothetical protein
          Length = 546

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 20  TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
           TV DA + M    V A+++        L+GI+T++D   ++I +G   + T V  IMT  
Sbjct: 77  TVSDACRRMAARRVDAVLLTD--ANALLSGIVTDKDISARVIAEGLRPEQTIVSKIMTRN 134

Query: 80  NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
              I V  ++  + A+Q M   + RH+PV+ + E+I ++ I
Sbjct: 135 P--IFVASDSLAIDALQKMVQGKFRHLPVVENGEVIALLDI 173



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 15  CTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGD 74
            +  D VY A K M    V ++++V   +   + GI+T +D L +++    S + T V  
Sbjct: 241 ASPSDPVYVAAKRMRDLQVNSVIIVTGNK---IQGILTSKDILMRVVAHNISPELTLVEK 297

Query: 75  IMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVIN 110
           +MT   +  T+   T +L A+ +M D +  H+PV++
Sbjct: 298 VMTSNPECATL--ETTILDALHIMHDGKFLHLPVVD 331


>30147.m014487 conserved hypothetical protein
          Length = 545

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 20  TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
           T+ +A + M    V AL++        L GI+T++D   ++I +  + + T V  +MT  
Sbjct: 71  TIQEACRRMAARRVDALLLTD--SNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN 128

Query: 80  NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIG 121
              + V  +T  ++A+Q M   + RH+PV+ + E+I ++ I 
Sbjct: 129 P--VFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 168


>34735.m000048 conserved hypothetical protein
          Length = 149

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 5   GKGADGSWLWCTTDDTVYDAVKSMT-HHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQ 63
           GK      + C  D++V  A   M  HH    +VV     +++ AGI+T+RD +  ++  
Sbjct: 4   GKLCTVDTVCCARDESVQGAALLMRKHHVGDIVVVDDVDGERTPAGIVTDRDIVVSVVAL 63

Query: 64  GRSSKSTKVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVIND-KEMIGMVSIGD 122
           G      +VGDIMT++  L+T   +  V   ++ M    IR +PV+ +   + G+VS  D
Sbjct: 64  GLDPAGLQVGDIMTDD--LLTADEHDDVSITIERMRLRGIRRVPVVGEGGRLAGIVSADD 121