Jatropha Genome Database

JcCB0372411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372411.10 + phase: 0 /pseudo/partial
         (170 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002399 allantoinase, putative                                  274   2e-74
28964.m000072 dihydroorotase, putative                                 60   4e-10
34923.m000020 dihydroorotase, putative                                 52   2e-07

>29851.m002399 allantoinase, putative
          Length = 500

 Score =  274 bits (700), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/149 (87%), Positives = 140/149 (93%)

Query: 18  YQEIQQDSENYTEDAENDPRHYSTYLKTRPPSWEEAAIRDLVTLSKDTRIGGPAEGAHLH 77
           + EIQQDSE+Y ED  +DPRHYSTYLKTRP SWEEAAIR+L+T+SKDTRIGGPAEG+HLH
Sbjct: 225 HAEIQQDSESYIEDGMDDPRHYSTYLKTRPASWEEAAIRELLTVSKDTRIGGPAEGSHLH 284

Query: 78  IVHLSDSGSSLQLIKLAKRSGDSVTVETCPHYLAFSAEEIKDGDTRFKCAPPIRDSANKE 137
           IVHLSDSGSSLQL+K AKRSGDSVTVETCPHYLAFSAEEI+DGDTRFKCAPPIRD+ NKE
Sbjct: 285 IVHLSDSGSSLQLLKQAKRSGDSVTVETCPHYLAFSAEEIQDGDTRFKCAPPIRDATNKE 344

Query: 138 ALWKALLGGDIDMLSSDHSPTVPELKLFN 166
           ALWKALL GDIDMLSSDHSPTVPELKL N
Sbjct: 345 ALWKALLKGDIDMLSSDHSPTVPELKLLN 373


>28964.m000072 dihydroorotase, putative
          Length = 293

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 43  LKTRPPSWEEAAIRDLVTLSKDTRIGGPAEGAHLHIVHLSDSGSSLQLIKLAKRSGDSVT 102
           LK  P + E  A++ ++ +++       A G +LHI  +S +  S++LI+ AK+SG  VT
Sbjct: 65  LKGIPSAAESIALQTMLRIAQ-------ATGVNLHIARVS-TAESVELIRQAKQSGMQVT 116

Query: 103 VETCPHYLAFSAEEIKDGDTRFKCAPPIRDSANKEALWKALLGGDIDMLSSDHSPT 158
            +    +L  +  +I   D+     PP+R   +++AL   LL G +D + SDH+P 
Sbjct: 117 ADVSIQHLHLTDMDIGFFDSMVHLTPPVRTQRDRDALRAGLLDGTLDAICSDHTPV 172


>34923.m000020 dihydroorotase, putative
          Length = 329

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 57  DLVTLSKDTRIGGPAEGAHLHIVHLSDSGSSLQLIKLAKRSGDSVTVETCPHYLAFSAEE 116
           +L+ L +D R+     G + H   +S    S+  IKLAK  G  VT     + LA +  +
Sbjct: 120 ELIPLERDLRVAQLTRGNY-HAAMISVP-ESVDAIKLAKSRGAKVTCGISINNLALNEND 177

Query: 117 IKDGDTRFKCAPPIRDSANKEALWKALLGGDIDMLSSDHSP 157
           I +  T FK  PP+R   ++ A+ +AL  G+ID++ S H P
Sbjct: 178 IGEYRTFFKLYPPLRTEDDRVAMVEALAKGEIDIIVSSHDP 218