Jatropha Genome Database

JcCB0370021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0370021.10 - phase: 0 
         (141 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29799.m000633 superoxide dismutase [fe], putative                     167   1e-42
30147.m014368 superoxide dismutase [fe], putative                      96   8e-21

>29799.m000633 superoxide dismutase [fe], putative
          Length = 265

 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 96/130 (73%), Gaps = 4/130 (3%)

Query: 1   MGLCYNPFPPSCRLQVVDSSRQLKNADNXXXXXXXXXXXRPFNGFRRASPKLFAYYGLKT 60
           M  C N  PP  RL V D S QLKN D            R F   +RAS KL AYYGLKT
Sbjct: 1   MSWCCNLSPPRSRLLVGDYSLQLKNLDLKLLSLRNKQKRRQF---QRAS-KLVAYYGLKT 56

Query: 61  PPYELDALEPYMSKKTLEMHWGEYHRGYVEELNKELAKDDVLYGYTMEELIKVTYNNGNP 120
           PPY LDALEPYMS+KTLE+HWGE+HR YVE LNK+LAKDD+LYGYTM+EL+KVTYNNGNP
Sbjct: 57  PPYPLDALEPYMSRKTLEIHWGEHHRAYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNP 116

Query: 121 LPQFNNAAQV 130
            P+FNNAAQV
Sbjct: 117 FPEFNNAAQV 126


>30147.m014368 superoxide dismutase [fe], putative
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query: 46  RRASP-KLFAYYGLKTPPYELDALEPYMSKKTLEMHWGEYHRGYVEELNKELAKDDVLYG 104
           R+ +P ++ A + LK PPY LDALEP MSK TLE HWG++HR YV+ LNK++   + L G
Sbjct: 39  RKTTPARITAIFELKPPPYPLDALEPLMSKDTLEYHWGKHHRAYVDNLNKQIVGTE-LDG 97

Query: 105 YTMEELIKVTYNNGNPLPQFNNAAQV 130
            ++E+++ VTYN G+ LP FNNAAQ 
Sbjct: 98  MSLEDVVLVTYNKGDMLPAFNNAAQA 123