Jatropha Genome Database

JcCB0369011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369011.10 - phase: 0 /pseudo/partial
         (159 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013976 spermidine synthase 1, putative                         187   2e-48
28610.m000070 spermidine synthase 1, putative                         144   1e-35
30169.m006516 spermidine synthase 1, putative                         122   6e-29
29739.m003604 Spermidine synthase, putative                            58   2e-09
29726.m003894 spermine synthase, putative                              57   5e-09

>30147.m013976 spermidine synthase 1, putative
          Length = 343

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 92/107 (85%)

Query: 53  NTPGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKD 112
           + PGWYADV CGWPGEAHLYK+EKVLFHGKSEYQDL+VFQSSAHGKIVILNGALQLTEKD
Sbjct: 55  SIPGWYADVPCGWPGEAHLYKMEKVLFHGKSEYQDLYVFQSSAHGKIVILNGALQLTEKD 114

Query: 113 EFVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
           EF YQEMLTHLPLCSIPNPKKV           +EISRHSSV QIDI
Sbjct: 115 EFAYQEMLTHLPLCSIPNPKKVLLIGGGDGGILKEISRHSSVEQIDI 161


>28610.m000070 spermidine synthase 1, putative
          Length = 346

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 83/105 (79%)

Query: 55  PGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEF 114
           PGW++++S  WPGEAH  KVEK+LF GKS+YQ++ VFQSS +GK+++L+G +QLTE+DE 
Sbjct: 57  PGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDEC 116

Query: 115 VYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
            YQEM+THLPLCSIPNP+KV           RE++RHSS++ IDI
Sbjct: 117 AYQEMITHLPLCSIPNPQKVLVIGGGDGGVLREVARHSSIDHIDI 161


>30169.m006516 spermidine synthase 1, putative
          Length = 368

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 14/118 (11%)

Query: 56  GWYADVSCG--------------WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVI 101
           GW+++   G              WPGEAH  +V+ +L+ GKSEYQ++ VF+SSA+GK+++
Sbjct: 53  GWFSESQSGSGTASKRVYFNNPMWPGEAHSLEVKNILYKGKSEYQEILVFESSAYGKVLV 112

Query: 102 LNGALQLTEKDEFVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
           L+G +QLTEKDE  YQEM+ HLPLCSIP+PK V           REISRHSSV  IDI
Sbjct: 113 LDGIVQLTEKDECAYQEMIVHLPLCSIPSPKSVLVVGGGDGGVLREISRHSSVELIDI 170


>29739.m003604 Spermidine synthase, putative
          Length = 339

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 72  YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
           + +  VL  G SE+Q++ +  +   GK+++++G +Q  E DEF+Y E L H  L   P P
Sbjct: 49  FALNSVLHKGTSEFQEIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPALLCHPKP 108

Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
           + V           RE  +H+S+ ++
Sbjct: 109 QNVFIMGGGEGSAAREALKHNSIEKV 134


>29726.m003894 spermine synthase, putative
          Length = 336

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 72  YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
           + +  +L  G S+YQD+ +  +   GK ++++G LQ  E DEF+Y E L H  +    N 
Sbjct: 46  FALNSILHTGVSQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHECLVHPAILHHSNS 105

Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
           K +           REI RH +V ++
Sbjct: 106 KTIFIMGGGEGSTAREILRHRTVEKV 131