Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.20 - phase: 0 
         (84 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014289 tetracycline transporter, putative                      113   2e-26
29869.m001145 tetracycline transporter, putative                       90   2e-19
29930.m000618 Hippocampus abundant transcript 1 protein, putative      50   2e-07

>30170.m014289 tetracycline transporter, putative
          Length = 442

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 55/56 (98%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          MEKLSGLSHLFMT FLHNFST+MV+PAITDVTMSA+CPGRDECSLAIYL+GFQQA+
Sbjct: 1  MEKLSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAI 56


>29869.m001145 tetracycline transporter, putative
          Length = 410

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 47/55 (85%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQA 55
          MEKL+ LSHLF+T FL   +  MVVPAITDVTM A+CPG+DECSLAIYLSGFQQA
Sbjct: 1  MEKLTELSHLFVTIFLAGVAGMMVVPAITDVTMLALCPGQDECSLAIYLSGFQQA 55


>29930.m000618 Hippocampus abundant transcript 1 protein, putative
          Length = 443

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 2  EKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
           +L  L HL +   +H  +  M V  + DV  +A+CPG+  C+ AIY+SG QQ V
Sbjct: 11 RELRPLVHLLLPLSVHWVAEQMTVSVLVDVVTAALCPGQSTCAQAIYISGLQQVV 65