Jatropha Genome Database

JcCB0368291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.10 - phase: 0 /pseudo/partial/short
         (47 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014289 tetracycline transporter, putative                       61   1e-10
29869.m001145 tetracycline transporter, putative                       49   6e-07

>30170.m014289 tetracycline transporter, putative
          Length = 442

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 4  MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          +  LSHL +T FL+NFSTFMV PA+TDVTMSALCPG+
Sbjct: 4  LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGR 40


>29869.m001145 tetracycline transporter, putative
          Length = 410

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%)

Query: 4  MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          +  LSHL +T FL   +  MV PA+TDVTM ALCPGQ
Sbjct: 4  LTELSHLFVTIFLAGVAGMMVVPAITDVTMLALCPGQ 40