Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (271 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003359 conserved hypothetical protein                          266   8e-72
30146.m003441 hypothetical protein                                     70   8e-13

>29794.m003359 conserved hypothetical protein
          Length = 720

 Score =  266 bits (680), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 168/222 (75%), Gaps = 2/222 (0%)

Query: 10  KSQNGIDGGKPTPFSQNYLSHSVKVKDAGDSDKKNYSSRVPNLRLDTRNQSEEKLEVCVS 69
           K+Q+GID    T F QNYL HS +++DAGD D+KN  SR PNLR D RNQS+E LE CVS
Sbjct: 148 KTQSGIDMENSTSFGQNYLGHSTRLRDAGDKDQKNNISRGPNLRQDARNQSKENLEACVS 207

Query: 70  SRDHSVRSSTKFATRK-KIASLGDAYQNQQNPDLPGANFSRFCENDDFLQQE-STAFLQQ 127
           SR HSVRS T   +++  I    DA  +QQN D P A+ S  CEND  LQQE S A LQQ
Sbjct: 208 SRGHSVRSFTSSPSKELMIVRPEDASPSQQNLDDPVASSSSLCENDVCLQQEASAALLQQ 267

Query: 128 DNSGNGEGVPELTREIEKGNIFCPRSDSLSREDCSSPNKPEIDCELSGEKTCRSLQFGNG 187
           ++SG+ EGVPELTRE+EKGN   P SDS S ED +SPN+PEID E  G+++  S+QFGNG
Sbjct: 268 NDSGHDEGVPELTRELEKGNGPQPMSDSHSTEDLNSPNEPEIDSEHHGDRSYMSVQFGNG 327

Query: 188 DKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAIV 229
           DKSDDVSE SM+DS+SALD+SPD+VVGIIGQKHFWKARRAIV
Sbjct: 328 DKSDDVSEISMLDSVSALDVSPDDVVGIIGQKHFWKARRAIV 369


>30146.m003441 hypothetical protein
          Length = 783

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 42/49 (85%)

Query: 181 SLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAIV 229
           SLQ G+ ++ +D SETS+VDS+SAL+ISPD+VV IIG+K FWKARR IV
Sbjct: 378 SLQVGDVERHNDGSETSLVDSLSALEISPDDVVRIIGEKQFWKARRIIV 426