Jatropha Genome Database

JcCB0365891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365891.10 + phase: 2 /pseudo/partial
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008984 conserved hypothetical protein                          105   1e-23

>30174.m008984 conserved hypothetical protein
          Length = 282

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 74/102 (72%), Gaps = 4/102 (3%)

Query: 27  KFKGVVNPATLRKRL-QKISRMLEKVGKAVAP---TGEGESMSRMASLSEGPTLFKSPSK 82
           + +GVV+P+ LRK +  + ++ +   G+   P   TGEG+SMSRM SL EGP  FKSPSK
Sbjct: 169 QVQGVVSPSLLRKVIITEAAKNIRDDGRGWRPAALTGEGDSMSRMGSLGEGPAAFKSPSK 228

Query: 83  SWKMTGSPRYASMEPRSPIIGDVVLNKIEEVSRSVKVWNFLV 124
           +WK+  SPRYAS+EPRS I G+V+LNK+EEVS+SVK    L+
Sbjct: 229 TWKVMNSPRYASLEPRSAIPGEVLLNKLEEVSKSVKKIELLI 270