Jatropha Genome Database

JcCB0365841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365841.10 - phase: 0 /pseudo
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form...   198   5e-52
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form...   142   3e-35
29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form...   124   1e-29
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form...   120   1e-28
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form...   112   5e-26
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form...    94   1e-20

>29848.m004649 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1083

 Score =  198 bits (503), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 90/93 (96%), Positives = 92/93 (98%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEA+AGMVAGS+RRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVG TASGDTFVACNE
Sbjct: 1  MEATAGMVAGSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGHTASGDTFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG
Sbjct: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93


>29482.m000171 Cellulose synthase A catalytic subunit 3
          [UDP-forming], putative
          Length = 977

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 74/93 (79%), Gaps = 2/93 (2%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEA AG+VAGS+ RNELV I    +   KPLKNL+GQ C+ICGD +G+T  GD FVACNE
Sbjct: 1  MEAGAGLVAGSHNRNELVVIHGHEEH--KPLKNLDGQVCEICGDEIGLTVDGDLFVACNE 58

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          C FP CRPCYEYER++GTQ CPQCKTRY+R KG
Sbjct: 59 CGFPACRPCYEYERREGTQVCPQCKTRYKRLKG 91


>29863.m001055 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1095

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 68/93 (73%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          ME    ++AGS+ RNE V I  D  +    +K L+GQ CQICGD + +T  G+ FVACNE
Sbjct: 1  METKGRLIAGSHNRNEFVLINADEIARVTSVKELSGQICQICGDEIEITVDGEPFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYER++G ++CPQCKT Y+R KG
Sbjct: 61 CAFPVCRPCYEYERREGNRACPQCKTIYKRIKG 93


>29606.m000101 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1085

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query: 20 IRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQ 79
          +  + ++G KP+K++  Q CQIC DNVG T  GD FVACN CAFPVCRPCYEYERKDG Q
Sbjct: 1  MESEGETGAKPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQ 60

Query: 80 SCPQCKTRYRRHKG 93
          SCPQCKTRY+R KG
Sbjct: 61 SCPQCKTRYKRQKG 74


>29761.m000416 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 899

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 54/67 (80%)

Query: 27 GPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 86
          GPK  K    Q CQIC DNVG T +G+ FVAC+ CAFPVCRPCYEYERKDG QSCPQCKT
Sbjct: 11 GPKNAKQNAIQICQICSDNVGTTVNGEPFVACHVCAFPVCRPCYEYERKDGNQSCPQCKT 70

Query: 87 RYRRHKG 93
          +Y+RHKG
Sbjct: 71 KYKRHKG 77


>29637.m000754 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1044

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 49/72 (68%)

Query: 22 HDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSC 81
           D D    P +     +C++CGD++GV   G  FVAC+ C FPVC+PCYEYER +G Q C
Sbjct: 13 QDYDEHRPPTRQSGKVSCRVCGDDIGVKEDGTLFVACHVCRFPVCKPCYEYERSEGNQCC 72

Query: 82 PQCKTRYRRHKG 93
          PQC TRY+RH+G
Sbjct: 73 PQCNTRYKRHRG 84