Jatropha Genome Database

JcCB0365731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365731.10 + phase: 0 /partial
         (53 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000482 gaba(A) receptor-associated protein, putative            96   3e-21
30064.m000481 gaba(A) receptor-associated protein, putative            96   4e-21
29842.m003584 gaba(A) receptor-associated protein, putative            94   1e-20
30174.m008829 gaba(A) receptor-associated protein, putative            82   5e-17
29636.m000773 gaba(A) receptor-associated protein, putative            80   1e-16
30076.m004580 autophagy 8h, putative                                   55   9e-09

>30064.m000482 gaba(A) receptor-associated protein, putative
          Length = 125

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA SSFK EHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK
Sbjct: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 49


>30064.m000481 gaba(A) receptor-associated protein, putative
          Length = 120

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA SSFK EHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK
Sbjct: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 49


>29842.m003584 gaba(A) receptor-associated protein, putative
          Length = 120

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA SSFK EHPLERRQAE+ARIREKYPDRIPVIVE+AERSDIPDIDKKK
Sbjct: 1  MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKK 49


>30174.m008829 gaba(A) receptor-associated protein, putative
          Length = 117

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          M  SSFKFEH  E+R+AE+ RIR KYPDR+PVIVE+AERSDIPDIDKKK
Sbjct: 1  MTKSSFKFEHDFEKRRAEAVRIRAKYPDRVPVIVEKAERSDIPDIDKKK 49


>29636.m000773 gaba(A) receptor-associated protein, putative
          Length = 122

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 45/49 (91%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA S FK EH LE+R+AE+ARIREKYPDRIPVIVE+AERSDIP+IDKKK
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKK 49


>30076.m004580 autophagy 8h, putative
          Length = 125

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 6  NSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
           SSFK E   E+R  ES  I  KYPDR+PVIVER  ++D+P+++KKK
Sbjct: 4  TSSFKNEFTFEQRLEESNDIIAKYPDRVPVIVERYCKTDLPELEKKK 50