Jatropha Genome Database

JcCB0364041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0364041.10 + phase: 0 /partial
         (155 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007258 conserved hypothetical protein                          239   4e-64
29634.m002118 conserved hypothetical protein                           96   8e-21

>30131.m007258 conserved hypothetical protein
          Length = 440

 Score =  239 bits (609), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 128/157 (81%), Gaps = 2/157 (1%)

Query: 1   VWASGFSAAFLKKNSVATRVHMSS--SDVEVFVGGKKFVEPKPAATEAALLVILEKFFEV 58
           VWASGFSAAFLKKNSVA++VH++S  S VEV VG K FVEPKPAATEAALLVILEKFF V
Sbjct: 284 VWASGFSAAFLKKNSVASKVHLNSRESSVEVSVGRKTFVEPKPAATEAALLVILEKFFGV 343

Query: 59  VLNFPXXXXXXXXXXXXXXXXQPTCPQLYIYSTADRVIPAKSVESFIQEQRRAGHEVRAC 118
           VLN P                QPTCPQLYIYS+ADRVIPA+SVE+FI+EQR+ GHEVRAC
Sbjct: 344 VLNLPTVNRRLSDVLSLLSSGQPTCPQLYIYSSADRVIPARSVETFIEEQRKVGHEVRAC 403

Query: 119 NFVSSPHVDHFRNDPNLYSTQLSQFLDDYVLACCKHS 155
           NFVS+PHVDHFRNDP LY TQLSQFLDD VL CCKH+
Sbjct: 404 NFVSTPHVDHFRNDPKLYGTQLSQFLDDCVLTCCKHA 440


>29634.m002118 conserved hypothetical protein
          Length = 265

 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 3/146 (2%)

Query: 1   VWASGFSAAFLKKNSVATRVHMSSSDVEVFVGGKKFVEPKPAATEAALLVILEKFFEVVL 60
           VWA+GFSAA LKK+S A  +H   ++++         E K    E  +L +LEK F  +L
Sbjct: 117 VWAAGFSAALLKKSSSA--IH-PLAEIKHQAIKLNMQENKSPLVEVLVLAVLEKLFSKML 173

Query: 61  NFPXXXXXXXXXXXXXXXXQPTCPQLYIYSTADRVIPAKSVESFIQEQRRAGHEVRACNF 120
             P                QP CPQLY+YSTAD+V+P +S+E  +++QR+ G +V + NF
Sbjct: 174 KLPDVERKLKKIVFVLSENQPHCPQLYLYSTADKVVPFQSIELQMEDQRKIGRKVVSYNF 233

Query: 121 VSSPHVDHFRNDPNLYSTQLSQFLDD 146
            SSPHVDH+R  P+ Y + L  FL +
Sbjct: 234 GSSPHVDHYRTFPDTYLSVLHNFLRE 259