Jatropha Genome Database

JcCB0361141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0361141.10 + phase: 0 /partial
         (284 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29763.m000187 U4/U6.U5 tri-snRNP-associated protein, putative         116   1e-26

>29763.m000187 U4/U6.U5 tri-snRNP-associated protein, putative
          Length = 213

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 66/94 (70%), Gaps = 4/94 (4%)

Query: 191 VSDFVDGIAREQLEKXXXXXXXXXXXXXXXXXXXXXXXXMMKKFGIPIGFDSTKGKPVPG 250
           VSDFVDGIARE +E                         MMKK GIP+GFDSTKGKPVPG
Sbjct: 124 VSDFVDGIAREVVEGEVKEGGGGGEDVAVDEDEIE----MMKKLGIPVGFDSTKGKPVPG 179

Query: 251 ADVSGVRVVTKRQPRQYMNRRGGFNRPLPPERNR 284
           ADVSGVR VTKRQPRQYMNRRGGFNRPLPPERNR
Sbjct: 180 ADVSGVRPVTKRQPRQYMNRRGGFNRPLPPERNR 213