Jatropha Genome Database

JcCB0360521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360521.10 - phase: 0 /partial
         (380 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002047 stromal antigen, putative                               614   e-176

>29647.m002047 stromal antigen, putative
          Length = 1106

 Score =  614 bits (1583), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/365 (82%), Positives = 317/365 (86%), Gaps = 1/365 (0%)

Query: 5   QACGAKFHIKXXXXXXXXXXXXXXXXXXXARKGEVEDYQSTKRKEFKNFKENLVSFWDIL 64
           +ACGAKF IK                   ARKGEVEDYQS+KRK+ KNFK+NLVSFWD L
Sbjct: 109 EACGAKFCIKEELLDETDVDDVVVALVNLARKGEVEDYQSSKRKDVKNFKDNLVSFWDNL 168

Query: 65  VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASLMGLQLVKSFISVAKTLGAQRE 124
           VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIAS +GLQLV SFI+VAKTLGAQRE
Sbjct: 169 VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASTIGLQLVTSFITVAKTLGAQRE 228

Query: 125 TTQRQLNAEKKKRTEGPRLESLNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIR 184
           TTQRQLNAEKKKRT+GPR+ESLNKRLS+THEKIVVLEDMMRKIFTGLFVHRYRDIDPNIR
Sbjct: 229 TTQRQLNAEKKKRTDGPRVESLNKRLSMTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIR 288

Query: 185 MSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDMDDNVPTLG 244
           MSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQ+LYD+DDNVPTLG
Sbjct: 289 MSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQSLYDVDDNVPTLG 348

Query: 245 LFTERFSNRMIELADDIDVSVAVSAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXADIRRA 304
           LFTERFSNRMIELADDIDVSVAV AIGLVKQLLRHQ                  ADIRRA
Sbjct: 349 LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPADIRRA 408

Query: 305 IGELVYDHLIAQKFNGSQSGTRGNDNGSSVVHLSRMLQILREFSTDPILSIYVIDDVWEY 364
           IGELVYDHLIAQK N SQSG+RGN+NGS  VHLSRMLQILREFST+PILS YV+DDVWEY
Sbjct: 409 IGELVYDHLIAQKLNSSQSGSRGNENGSE-VHLSRMLQILREFSTEPILSTYVVDDVWEY 467

Query: 365 MKAMK 369
           MKAMK
Sbjct: 468 MKAMK 472