Jatropha Genome Database

JcCB0359851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0359851.10 + phase: 0 /partial
         (460 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29703.m001490 pentatricopeptide repeat-containing protein, putative   691   0.0  
28357.m000100 pentatricopeptide repeat-containing protein, putative   161   6e-40
30174.m009107 pentatricopeptide repeat-containing protein, putative    62   5e-10
29805.m001488 pentatricopeptide repeat-containing protein, putative    55   6e-08

>29703.m001490 pentatricopeptide repeat-containing protein, putative
          Length = 787

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/466 (72%), Positives = 395/466 (84%), Gaps = 6/466 (1%)

Query: 1   MRVSSSQKPISEFVNSSLTNLHMSIVVLGMCNGFTPQSHSLSTTAGTILVQARDLAKLST 60
           ++VSSS +P+  F  SS TN  + +  LGM NG   Q +SLST AGTILVQARD A+LS 
Sbjct: 38  VQVSSSHRPVYAFATSSFTNSLLPLDGLGMWNGLNYQVNSLSTLAGTILVQARDPARLSA 97

Query: 61  EIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVEQAI 120
            +E+AI+    +DAW LFE+HMQ+EGFP+K++VNK+LAS AES D+ WLEKAYGLVEQAI
Sbjct: 98  GVEHAINELRLSDAWKLFEKHMQMEGFPQKSVVNKLLASIAESNDVPWLEKAYGLVEQAI 157

Query: 121 GESKQNLLEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAP 180
            ESKQNLLEK+ LI+LS+ LAKCGL V AST++RKLIEMEQYPPVTAWSAILAHMSLTAP
Sbjct: 158 KESKQNLLEKDTLIFLSFNLAKCGLAVLASTVLRKLIEMEQYPPVTAWSAILAHMSLTAP 217

Query: 181 GAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLLFGTTKKAEQL 240
           GAYLA+ELILEIGYLFQDG+VDPRKK NA LIAM+PNTTS+NIALAGCL+FGTT+KAEQL
Sbjct: 218 GAYLAAELILEIGYLFQDGKVDPRKKCNATLIAMKPNTTSVNIALAGCLVFGTTRKAEQL 277

Query: 241 LDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYNCLLTC 300
           LD++PR+ IKVNA LLITMA+IYERNGRR+EL KLQRH+DEA  +SDIQ+RQFYNCLL+C
Sbjct: 278 LDLIPRVGIKVNATLLITMAHIYERNGRRQELMKLQRHIDEAHSISDIQYRQFYNCLLSC 337

Query: 301 HLKFGDLDSASSMVLKMLRKAKEVRNSLAIATLGIQSDRKSY------SSLNHGEPDSLK 354
           HLKFGDLDSAS MVLKML KAKE RNSLA A    Q+D KS        S+NH EPD L 
Sbjct: 338 HLKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSKSSHEQISPDSVNHREPDGLN 397

Query: 355 QNKSIGNPMISYDEFLKDQKFLKLDAEAKELLNSLLSKLQAQVVLITTDRGVLQPTDKIY 414
           +++    PMIS+ EFLKD+ FLKLDAEAK LL+SLL+KLQ QV LITTDRG+LQPT+K+Y
Sbjct: 398 KSRPNRTPMISHGEFLKDRDFLKLDAEAKGLLDSLLAKLQTQVELITTDRGILQPTEKVY 457

Query: 415 VKLVKAFLEAGKTKELASFLNQAEKEDSPASNDDSILVNVINSCIS 460
           VKLVKAFLE+GKTKELA+FL +AEKEDSP+SNDDS LV+VINSCIS
Sbjct: 458 VKLVKAFLESGKTKELAAFLYKAEKEDSPSSNDDSPLVHVINSCIS 503


>28357.m000100 pentatricopeptide repeat-containing protein, putative
          Length = 689

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 157/303 (51%), Gaps = 12/303 (3%)

Query: 24  SIVVLGMCNGFTPQSH-------SLSTTAGTILVQARDLAKLSTEIENAIDNHGYNDAWN 76
           S+  L + +GF    H       S  T    +  +      L  ++E ++ +H  N+AW 
Sbjct: 23  SLRRLQVLDGFCKWHHFGNSQPFSTRTQPERLCWEGSSHGVLLRKLEVSLKDHRLNEAWV 82

Query: 77  LFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVEQAIGESKQNLLEKEALIYL 136
            F     + GFP+  +V ++LA  + S D RWL+KA  LV Q   E K +LL  E L  L
Sbjct: 83  TFNDFKTLYGFPKGYVVCRLLAELSYSSDPRWLQKACNLVSQIFKE-KSDLLPTETLTKL 141

Query: 137 SYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAPGAYLASELILEIGYLF 196
           S   A+  + +PAS ++R ++E E  P V+    I+ HM  T  G  LAS  +++I    
Sbjct: 142 SLSFARAQMPIPASMVLRVILERENTPAVSLLRLIVFHMVKTEVGTCLASNFLIQICECL 201

Query: 197 QDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLLFGTTKKAEQLLDMMPRIFIKVNAALL 256
              R+   +  +A +I +  +T   N+ L GC+ F ++ K ++L++ M R  I  +A  +
Sbjct: 202 L--RISANRNDHAKVIKL--DTLIFNLVLEGCVRFKSSLKGQELVEWMSRTGIIADAHSV 257

Query: 257 ITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYNCLLTCHLKFGDLDSASSMVLK 316
           + +A IYE NG R+E+KK + H+D+        ++Q Y  LL  H +F DLD+AS +VL 
Sbjct: 258 VIIAEIYEMNGLRDEIKKFKDHIDQVSAPFVCHYQQLYEVLLNLHFEFDDLDAASELVLD 317

Query: 317 MLR 319
           M R
Sbjct: 318 MNR 320


>30174.m009107 pentatricopeptide repeat-containing protein, putative
          Length = 650

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 48/389 (12%)

Query: 55  LAKLSTEIENAIDNHGYNDAWNLFEQHMQIEG-FPRKTIVNKVLASFAESMDIRWLEKAY 113
           +A L + I N++  +  + AW  F+        FP K++ N ++   +   D   L++A+
Sbjct: 55  VATLESTIHNSLLTNDTDQAWKSFKFLTSNSSYFPSKSLANSLITHLSSLQDTLNLKRAF 114

Query: 114 GLVEQAIGESKQNL-LEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAIL 172
             V   + ++ Q+L  E    +  S   A      PA  +++ + +   + P   W  ++
Sbjct: 115 ASVIFFMEKNPQSLDFETVQSVLESMKFANSA--APAFALVKCMFKHRYFMPFHLWGGLI 172

Query: 173 AHMSLTAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLL-F 231
            H+S    G ++A   + E  Y         R   +  L  M+P+  + N+AL  C    
Sbjct: 173 GHIS-KKNGMFVAFLKVFEESY---------RIAVDEKLDFMKPDLGACNLALECCCEEI 222

Query: 232 GTTKKAEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFR 291
            +   A+ ++++M  + IK +      +A +Y   G ++ + +L+  +   +G S +  R
Sbjct: 223 ESVSDADNVIEIMSVLGIKPDEMSFGFLAYLYALKGLQDRIVELKSLM---EGFSVLNKR 279

Query: 292 QFYNCLLTCHLKFGDLDSASSMVLKMLRKAKEVRNSLAIATL-----GIQSDR--KSYSS 344
            FY+ L+  ++K G+L+S S+ ++  LR+  E   ++   T      G   D   K  ++
Sbjct: 280 LFYSNLIRGYVKSGNLESVSATIICSLREEDEKNYNINEETYCEVVKGFLKDGSLKGLAN 339

Query: 345 L----NHGEPDSLKQNKSIGNPMISYDEFLKDQKFLKLDAEAKELLNSLLSKLQAQVVLI 400
           L       EPDS++ +KSI   +I+                    +N  LS  +A  +L 
Sbjct: 340 LIIEARKLEPDSIEIDKSISFGVIN------------------ACVNLGLSD-KAHSILD 380

Query: 401 TTDRGVLQPTDKIYVKLVKAFLEAGKTKE 429
             D         +YV ++KA+ + G+T E
Sbjct: 381 EMDAKGGSVGFGVYVPILKAYCKEGRTAE 409


>29805.m001488 pentatricopeptide repeat-containing protein, putative
          Length = 740

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 72  NDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVEQAIGESKQNLLEKE 131
           + AW  + Q   +   P  T ++++++  +       L +A  ++ +   E + + L+  
Sbjct: 74  DKAWIFYSQSPLL---PNPTCLSRLVSQLSYQNTPLSLSRAQSILTRLRQERQLHRLDAN 130

Query: 132 ALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAP--GAYLASELI 189
           +L  L+    K G +  A ++I  ++     P V AWSA+++ +S ++P  G   A +L 
Sbjct: 131 SLGLLAVSATKSGQLSYAVSLINSMLRSGYLPHVKAWSAVISRLS-SSPDDGPQQAIKLF 189

Query: 190 LEIGYLFQDGRVDPRKKSNAPLIA-MRPNTTSMNIALAGCLLFGTTKKAEQLLDMMPRIF 248
             I       RV  R+ ++A L+A   P+T + N  L  C   G  K   QL D M    
Sbjct: 190 NSITR-----RV--RRFNDAALVADSNPDTAAFNSVLNACANLGDGKMFLQLFDQMSEFG 242

Query: 249 IKVNAALLITMANIYERNGRREELK-KLQRHVDEAQGLSDIQFRQFYNCLLTCHLKFGDL 307
            + +      M  +  R  R++ L   L+R + +   L         + L+  ++ FGDL
Sbjct: 243 AEPDILTYNVMIKLCARCDRKDLLVFVLERVIQKRIPLCMTTL----HSLVAAYVGFGDL 298

Query: 308 DSASSMVLKMLRKAKEVRNSLAIATLGIQSDRKSYSSLNHGEPDSLKQNKSIGNPMISYD 367
           ++A  M   M    +E R  L      +  +   Y    +GE D ++ ++ +     +  
Sbjct: 299 ETAEIMAQAM----REGRRDLCKILREVNMEDLGY----YGE-DVIENSQRLDQNRKNMF 349

Query: 368 EFLKDQKFLKLDAEAKELLNSLLSKLQAQVVLITTDRGVLQPTDKIYVKLVKAFLEAGKT 427
            F   +K L    ++ +   SLL K+ A             P  +IY  L+K ++  G+ 
Sbjct: 350 VF---EKLLPNSIQSGDTEPSLLPKVYA-------------PDSRIYTTLMKGYMNQGRV 393

Query: 428 KELASFLNQAEKEDSPASNDDSILVNVINSCI 459
            +    L     +D  AS+ D +    + S +
Sbjct: 394 SDTIRMLEAMRHQDDNASHPDHVSYTTVISAL 425