Jatropha Genome Database

JcCB0359061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0359061.20 - phase: 0 
         (131 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29869.m001150 conserved hypothetical protein                           96   7e-21

>29869.m001150 conserved hypothetical protein
          Length = 129

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 73/129 (56%), Gaps = 5/129 (3%)

Query: 4   LRVAEG-RGSPKREFRSVKGXXXXXXXXXXXXESIAQSNGGSVVSQAANEDGVVRMKILV 62
           LRVAEG + S KRE RS++G            ESIAQ NGGSVVS   NEDGVVRMK+LV
Sbjct: 3   LRVAEGNKASSKREIRSLRGKNHRSLRNNLL-ESIAQVNGGSVVSHR-NEDGVVRMKLLV 60

Query: 63  KKQDLKQMLELVRX-XXXXXXXXXXXXXXXXVEQXXXXXXXXXXXXVNAGKESRRRSAWI 121
           +KQDL+QMLEL++                  VEQ             NA KES R   W+
Sbjct: 61  RKQDLRQMLELIKSGKNNSHQASFSLSSSSCVEQRLNLLWRKHLSRANAVKES-RHGCWV 119

Query: 122 PALQSIPEE 130
           PALQSIPEE
Sbjct: 120 PALQSIPEE 128