Jatropha Genome Database

JcCB0356071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0356071.10 + phase: 0 /partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001442 dihydrodipicolinate synthase, putative                  253   2e-68

>29830.m001442 dihydrodipicolinate synthase, putative
          Length = 367

 Score =  253 bits (647), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 133/160 (83%), Gaps = 2/160 (1%)

Query: 1   MAALSGYGVFLKESALQL--PRSVSTNYYKRRNAKWSPPQAAIIPNFHLPMRSFEVKNRT 58
           M  LS Y V LK+SALQL  P SVST++YKRR+ KW  PQAA+IPNFHLPMRSFEVKNRT
Sbjct: 1   MGILSSYSVCLKQSALQLQLPHSVSTDFYKRRSGKWRSPQAAVIPNFHLPMRSFEVKNRT 60

Query: 59  SSEEIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIVDXXXXXXXXXXXXXXQLMSWDE 118
           SSE+IKSLRLITAIKTPYLPDGRFDLEAYDAL+NMQIV+              QLMSWDE
Sbjct: 61  SSEDIKSLRLITAIKTPYLPDGRFDLEAYDALLNMQIVNGAEGVIVGGTTGEGQLMSWDE 120

Query: 119 HIMLIGHTVNCFGSSIKVIGNTGSNSTREAIHATVQGFAV 158
           HIMLIGHTVNCFG SIKVIGNTGSNSTREAIHAT QGFAV
Sbjct: 121 HIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAV 160