Jatropha Genome Database

JcCB0353641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0353641.10 + phase: 0 
         (62 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013651 branched-chain amino acid aminotransferase, putative    112   3e-26
29676.m001692 conserved hypothetical protein                           61   1e-10

>30170.m013651 branched-chain amino acid aminotransferase,
          putative
          Length = 440

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 52/61 (85%)

Query: 1  MCYEVKCSSCGKTTWCGCGRHVRSVYKRIPQGQHCLCNGWPGVDPNNPNDDAAQKSSSCT 60
          MCYEVKCSSCGKT+W GCGRHV SVY RIPQGQHCLC  WPGVDPNNPN  AAQ SS CT
Sbjct: 1  MCYEVKCSSCGKTSWGGCGRHVPSVYNRIPQGQHCLCRAWPGVDPNNPNAHAAQSSSFCT 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>29676.m001692 conserved hypothetical protein
          Length = 69

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 1  MCYEVKCSSCGKTTWCGCGRHVRSVYKRIPQGQHCLCNGWPGVDPNNPNDDAAQKSS 57
          MC+ V+C  CGK +W GCG+H+ ++Y  I +G+HC+C  WPGV      D    K +
Sbjct: 1  MCFRVECKQCGKYSWAGCGKHLVTLYDNIEKGKHCMCKSWPGVVIPAETDQRQPKGA 57