Jatropha Genome Database

JcCB0352111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0352111.10 - phase: 0 /partial
         (62 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27553.m000321 Cofactor required for Sp1 transcriptional activati...   118   5e-28

>27553.m000321 Cofactor required for Sp1 transcriptional activation
           subunit, putative
          Length = 168

 Score =  118 bits (296), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDGQ 60
           IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK RREEAQKLLKEALGTLDGQ
Sbjct: 109 IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKEALGTLDGQ 168