Jatropha Genome Database

JcCB0347911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0347911.10 + phase: 0 /partial
         (316 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000407 GDP mannose-4,6-dehydratase, putative                   318   2e-87
36004.m000026 GDP mannose-4,6-dehydratase, putative                   106   1e-23
29783.m000322 UDP-glucuronate 5-epimerase, putative                    52   5e-07

>28623.m000407 GDP mannose-4,6-dehydratase, putative
          Length = 237

 Score =  318 bits (816), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 144/152 (94%), Positives = 148/152 (97%)

Query: 165 MFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF 224
           MFGST PPQSE +PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF
Sbjct: 1   MFGSTAPPQSELSPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF 60

Query: 225 VTRKITRAVGRIKTGLQNKLFLGNLSASRDWGFAGDYVEAMWMMLQQEMPDDYVVATEES 284
           VTRKITRAVGRIK GLQ+KLFLGNL+ASRDWGFAGDYVEAMWMMLQQE PDDYVVATEES
Sbjct: 61  VTRKITRAVGRIKIGLQSKLFLGNLNASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEES 120

Query: 285 HTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPA 316
           HTVEEFL+VAFGYVGLNWKDHVVIDKRYFRPA
Sbjct: 121 HTVEEFLQVAFGYVGLNWKDHVVIDKRYFRPA 152


>36004.m000026 GDP mannose-4,6-dehydratase, putative
          Length = 93

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 4/95 (4%)

Query: 116 SHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPP-PQS 174
           SHV VSF+ P+YTA+    G LR+LEA+R  +    ++ I  YQA +SE++G     PQS
Sbjct: 2   SHVKVSFDTPEYTANADGIGTLRILEAIRI-LGLEKKTKI--YQASTSELYGLVQAVPQS 58

Query: 175 ETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACN 209
           ETTPF+PRSPYA +K  A+W TVNYREAYG++ACN
Sbjct: 59  ETTPFYPRSPYAVAKMYAYWITVNYREAYGMYACN 93


>29783.m000322 UDP-glucuronate 5-epimerase, putative
          Length = 433

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 27/193 (13%)

Query: 31  LITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDP--HNAHKARMKLH- 87
           L+TG  G  G++++  L  +G  V GL     NFN       Y DP    A K+ +  H 
Sbjct: 96  LVTGAAGFVGTHVSLALKKRGDGVVGL----DNFNN------YYDPSLKKARKSLLNSHG 145

Query: 88  ----YADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 143
                 D+ DA  L +  D +    V +LAAQ+ V  + E P         G + LLEA 
Sbjct: 146 VFIVEGDVNDARLLAKLFDVVAFSHVMHLAAQAGVRYAMENPHSYVHSNIAGLVTLLEAC 205

Query: 144 RSHIAATGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYR 200
           +S   A  +  I +  A SS ++G     P  +S+ T   P S YAA+K A    T  Y 
Sbjct: 206 KS---ANPQPAIVW--ASSSSVYGLNDKVPFSESDRTD-QPASLYAATKKAGEEITHTYN 259

Query: 201 EAYGLFACNGILF 213
             YGL +  G+ F
Sbjct: 260 HIYGL-SITGLRF 271