Jatropha Genome Database

JcCB0342871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342871.10 - phase: 1 /pseudo/partial
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28838.m000254 starch synthase, putative                               152   6e-38
29866.m000609 starch synthase, putative                               114   2e-26
30068.m002598 starch synthase, putative                               114   3e-26
29842.m003588 starch synthase, putative                                80   4e-16
29693.m002052 starch synthase, putative                                74   3e-14
28179.m000474 starch synthase, putative                                58   2e-09
30005.m001301 hypothetical protein                                     48   2e-06

>28838.m000254 starch synthase, putative
          Length = 754

 Score =  152 bits (385), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 93/132 (70%), Gaps = 5/132 (3%)

Query: 13  FIWVTNGINVSEWDPSSDEHIA----FHYSADDL-SGKVQCKIALQKELGLPVRPDCPLI 67
           F  + NGI+  EW+P  D H+      HYS + L +GK QCK ALQKELGLPVRPD PLI
Sbjct: 512 FSGIVNGIDTKEWNPLCDVHLTSDGYTHYSLETLDTGKSQCKAALQKELGLPVRPDVPLI 571

Query: 68  GFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGF 127
           GFIGRLD+QKG+DLI  A+P +M  D+Q VMLG+G    E+ +R  ES + DK RGWVGF
Sbjct: 572 GFIGRLDHQKGVDLIAEAIPWMMGQDVQLVMLGTGRPDLEQLLRQFESQHSDKVRGWVGF 631

Query: 128 NVPISHRITAGC 139
           +V  +HRITAG 
Sbjct: 632 SVKTAHRITAGA 643


>29866.m000609 starch synthase, putative
          Length = 624

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 13  FIWVTNGINVSEWDPSSDEHIAFHYSADDLS-GKVQCKIALQKELGLPVRPDCPLIGFIG 71
            I + NG++V EW+PS+D++I   + A  ++  K   K ALQ E+GLPV  + P+IGFIG
Sbjct: 346 IIGIVNGMDVQEWNPSTDKYINVKFDATTVTDAKPLLKEALQAEVGLPVDRNIPVIGFIG 405

Query: 72  RLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFNVPI 131
           RL+ QKG D++  A+P  +++++Q ++LG+G +  EE +   E+ Y  K RG   FNVP+
Sbjct: 406 RLEEQKGSDILAAAIPYFIQENVQIIILGTGKKHMEEQIMQLETLYPSKARGAAKFNVPL 465

Query: 132 SHRITAGC 139
           +H I AG 
Sbjct: 466 AHMIIAGA 473


>30068.m002598 starch synthase, putative
          Length = 526

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)

Query: 16  VTNGINVSEWDPSSDEHIAFHYSADDLS-GKVQCKIALQKELGLPVRPDCPLIGFIGRLD 74
           + NG++V EW+P++D++I  +Y A  ++  K   K ALQ E+GLPV  + PLIGFIGRL+
Sbjct: 292 IINGMDVQEWNPATDKYIGINYDATTVTEAKPLLKEALQAEVGLPVDRNIPLIGFIGRLE 351

Query: 75  YQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFNVPISHR 134
            QKG D++  A+ +L + ++Q V+LG+G + +E+ +   E  Y DK RG   FNVP++H 
Sbjct: 352 EQKGSDILVAAISQLAKYNVQIVILGTGKKAFEKQIEQLEVLYPDKCRGVAKFNVPLAHM 411

Query: 135 ITAGC 139
           I AG 
Sbjct: 412 IIAGA 416


>29842.m003588 starch synthase, putative
          Length = 1095

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 80/133 (60%), Gaps = 7/133 (5%)

Query: 13  FIWVTNGINVSEWDPSSDEHIAFHYSADDL-SGKVQCKIALQKELGLPVRPDCPLIGFIG 71
           F  + NGI+   WDP +D+ I   Y+++++  GK   K ALQ+ LGL  + D PLIG I 
Sbjct: 848 FHGILNGIDPDIWDPYNDKFIPVTYTSENVVEGKRAAKEALQQRLGLK-KADLPLIGIIT 906

Query: 72  RLDYQKGIDLIRWAVPELMEDDIQFVMLGSG--DRLYEEWMRVS---ESTYRDKFRGWVG 126
           RL +QKGI LI+ A+   ++ + Q V+LGS    R+  +++ ++    S++ D+ R  + 
Sbjct: 907 RLTHQKGIHLIKHAIWRTLDRNGQVVLLGSAPDPRIQNDFVNLANQLHSSHADRARLCLT 966

Query: 127 FNVPISHRITAGC 139
           ++ P+SH I AG 
Sbjct: 967 YDEPLSHLIYAGA 979


>29693.m002052 starch synthase, putative
          Length = 998

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 11  KCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVR-PDCPLIGF 69
           K FI + NGI+   W+P++D  +   YSA+DL  K + K+A ++ LGL       PL+G 
Sbjct: 745 KKFIGILNGIDTDSWNPATDTCLKVQYSANDLQAKAENKLATRRLLGLSTADARQPLVGC 804

Query: 70  IGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSG 102
           I RL  QKG+ LIR A+   +E   QF++LGS 
Sbjct: 805 ITRLVPQKGVHLIRHAIYRTVELGGQFILLGSS 837


>28179.m000474 starch synthase, putative
          Length = 720

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query: 19  GINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVRPDCPLIGFIGRLDYQKG 78
           G + S WDPS D  +  +YS DD+ GK  C++ALQ+ +GL       L+G I        
Sbjct: 460 GFDKSTWDPSKDRFLPENYSKDDMKGKTVCRVALQQYVGLSNNTSVVLVGCILSELSDFN 519

Query: 79  IDLIRWAVPELMEDDIQFVMLGS 101
           +D ++  V     +++QF+ +GS
Sbjct: 520 VDSLKAVVWNATRNNVQFIFMGS 542


>30005.m001301 hypothetical protein
          Length = 190

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 11  KCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVR-PDCPLIGF 69
           K FI + NGI+   W+P +D  +   Y A+DL GK + K+  ++ LGL       PL G 
Sbjct: 90  KKFIGILNGIDTDSWNPVTDTCLKVQYGANDLQGKAENKLPTRRLLGLSTADARQPLEGC 149

Query: 70  IGRLDYQKGIDLIRWAV 86
           I RL  QK  +   W V
Sbjct: 150 ITRLVPQKYKERWSWEV 166