Jatropha Genome Database

JcCB0342441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342441.10 + phase: 0 
         (415 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014298 ornithine decarboxylase, putative                       528   e-150
30170.m014299 ornithine decarboxylase, putative                       513   e-146
29929.m004547 ornithine decarboxylase, putative                       195   3e-50
30170.m014293 arginine/diaminopimelate/ornithine decarboxylase, ...   176   1e-44
30170.m014294 arginine/diaminopimelate/ornithine decarboxylase, ...   110   1e-24
30170.m014295 ornithine decarboxylase, putative                        81   1e-15
30131.m007074 diaminopimelate decarboxylase, putative                  74   2e-13

>30170.m014298 ornithine decarboxylase, putative
          Length = 416

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/411 (60%), Positives = 307/411 (74%), Gaps = 3/411 (0%)

Query: 4   NTRSLQANILGAPGVRGKRVTHLSK--DGLTDFMQSIIFNKQNDKEPFYVLDLGVVVSLM 61
            TR+    I+ APGV GK V  L K    LT+F+QS+I N Q  KEPFYVL+LG V  LM
Sbjct: 2   ETRNSMQVIIAAPGVEGKTVKSLPKTEHSLTEFVQSVILNTQVTKEPFYVLNLGAVAELM 61

Query: 62  DKWTRALPMVRPFYAVKCNPDRALLGTLASLGSNFDCASRAEIESVLSLGVSPERIVYAN 121
           D W+R LPM++PFYAVKCN + +LLG LA+LG NFDCAS+ EI+++LSLGVSP+RIVYAN
Sbjct: 62  DTWSRQLPMIQPFYAVKCNSEPSLLGALAALGCNFDCASKVEIQTILSLGVSPDRIVYAN 121

Query: 122 PCKAESHIQYAASVGVNLTTFDSRDELDKIRKWHPLCGLLIRIKAPDDGGAR-CPLGPKY 180
           PCKAESH++YAASVGVNLTTFDS  ELDKI K HP C LL+R+K+PDD  A+   LG K+
Sbjct: 122 PCKAESHLKYAASVGVNLTTFDSVYELDKISKLHPRCALLLRLKSPDDSAAKWASLGSKF 181

Query: 181 GALAEEVKPLLQAAQAAHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKM 240
           GAL +EV+PLL+AAQAA+L V GVSFHIGS +TN  AYR              RLGMP M
Sbjct: 182 GALPQEVEPLLRAAQAANLTVSGVSFHIGSESTNPNAYRTAIASAKAAFDTAGRLGMPPM 241

Query: 241 NVLNIGGGFTAGLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGK 300
            +LN+GGGFTAG  FD+AA  I SALQ YF   P+LK+ISEPGR+FAE+ FTLA +IIGK
Sbjct: 242 TLLNVGGGFTAGSFFDEAATVINSALQDYFAEYPQLKVISEPGRYFAETVFTLAASIIGK 301

Query: 301 RVRGELREYWINDGIYGSMNCLLYDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTC 360
           RVR ++REYW+NDG++GS  C+ Y      C PL+ +SNR NPTC+G   + ST+FGPTC
Sbjct: 302 RVRDDVREYWLNDGVFGSFLCVAYGITPPACLPLALSSNRTNPTCEGAPTHMSTLFGPTC 361

Query: 361 DALDTVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFNGFKTGAILTYLAY 411
           D++D +++ HQLPEL+ NDWLVFPNMGAY+    +NFNGF    + TYL Y
Sbjct: 362 DSVDKIVEEHQLPELETNDWLVFPNMGAYSKVCATNFNGFSPDVVFTYLVY 412


>30170.m014299 ornithine decarboxylase, putative
          Length = 416

 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/415 (61%), Positives = 311/415 (74%), Gaps = 3/415 (0%)

Query: 1   MGSNTRSLQANILGAPGVRGKRVTHLSKDG--LTDFMQSIIFNKQNDKEPFYVLDLGVVV 58
           M  ++ SLQ  IL APGV+GK VT LSKD   LTD+++SII N Q ++E FYVLDLG V 
Sbjct: 1   MERSSGSLQV-ILDAPGVQGKTVTTLSKDSSNLTDYVESIIVNTQVNRESFYVLDLGAVA 59

Query: 59  SLMDKWTRALPMVRPFYAVKCNPDRALLGTLASLGSNFDCASRAEIESVLSLGVSPERIV 118
            LM KW+R LPM++P+YAVKCN + +L+G LA+LG NFDCAS+AEI+S+LSLGVSP+RI+
Sbjct: 60  GLMHKWSRELPMIQPYYAVKCNSEISLIGALAALGCNFDCASKAEIQSILSLGVSPDRII 119

Query: 119 YANPCKAESHIQYAASVGVNLTTFDSRDELDKIRKWHPLCGLLIRIKAPDDGGARCPLGP 178
           YANP K ESHI YAA+V VNLTTFDS+ EL KI K HP C LLIRIK PDD GAR PLG 
Sbjct: 120 YANPSKPESHIIYAANVDVNLTTFDSKHELHKISKCHPKCSLLIRIKPPDDSGARWPLGS 179

Query: 179 KYGALAEEVKPLLQAAQAAHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMP 238
           K+GAL EE++PLL AAQAA L + GVSFHIGS + N  AYRG            SRLGMP
Sbjct: 180 KFGALPEEIEPLLLAAQAAKLTISGVSFHIGSESRNPHAYRGAIGAAKHVFDTASRLGMP 239

Query: 239 KMNVLNIGGGFTAGLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFTLATNII 298
            M VLNIGGGF AG  FD+AA  I++ALQ YF + P ++IISEPGR+FAE+ F LAT+I 
Sbjct: 240 PMRVLNIGGGFIAGSNFDEAATVIKAALQDYFGDNPGIEIISEPGRYFAETVFMLATSIT 299

Query: 299 GKRVRGELREYWINDGIYGSMNCLLYDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGP 358
           GKRVRG + EYWINDG++GS +C+++  +   C PL+C SNR NP CKG   Y STV+GP
Sbjct: 300 GKRVRGGIIEYWINDGVFGSFSCVIFGVSPPACVPLACTSNRANPKCKGEPTYKSTVYGP 359

Query: 359 TCDALDTVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFNGFKTGAILTYLAYSS 413
           TCDA+D V    +LPEL+INDWLVFP MGAYT A  + F GF + AI T+L YS+
Sbjct: 360 TCDAVDKVFVDQELPELEINDWLVFPYMGAYTTANATIFQGFSSEAIFTHLVYSN 414


>29929.m004547 ornithine decarboxylase, putative
          Length = 203

 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 122/166 (73%), Gaps = 1/166 (0%)

Query: 12  ILGAPGVRGKRVTHLSKDGLTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMDKWTRALPMV 71
           IL A  V+ +    + +  L     SI  N Q + EPFY+LD+GVV+SL++KW+  LP V
Sbjct: 20  ILEASRVKDQEAVEVPRGSLNSLNMSISEN-QEEAEPFYILDIGVVISLVEKWSHHLPHV 78

Query: 72  RPFYAVKCNPDRALLGTLASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHIQY 131
           +PFYAVK N + ALL  LA+LG+NFDCAS+AEIE++L LG+SP+RI+YANPCK+ SHI+Y
Sbjct: 79  KPFYAVKRNNESALLIVLATLGANFDCASQAEIEAILGLGISPDRILYANPCKSVSHIKY 138

Query: 132 AASVGVNLTTFDSRDELDKIRKWHPLCGLLIRIKAPDDGGARCPLG 177
           AA VGV LTTFDS++E+DKIRKWHP C LL+R +  +D  +   L 
Sbjct: 139 AARVGVYLTTFDSKEEVDKIRKWHPQCSLLLRAEIQNDKSSWIHLA 184


>30170.m014293 arginine/diaminopimelate/ornithine decarboxylase,
           putative
          Length = 97

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 87/97 (89%)

Query: 319 MNCLLYDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALDTVLKGHQLPELQIN 378
           MNC+LYDHAT+TC PL+C+SNR NPTCKGL+ +SSTVFGPTCDALDTVLKGH LPEL IN
Sbjct: 1   MNCILYDHATITCTPLACSSNRANPTCKGLRTHSSTVFGPTCDALDTVLKGHPLPELHIN 60

Query: 379 DWLVFPNMGAYTVAAGSNFNGFKTGAILTYLAYSSSS 415
           DWLVFPNMGAYT AAGSNFNGF T AILTYL YS+ S
Sbjct: 61  DWLVFPNMGAYTAAAGSNFNGFDTKAILTYLVYSNPS 97


>30170.m014294 arginine/diaminopimelate/ornithine decarboxylase,
           putative
          Length = 121

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 59/77 (76%)

Query: 169 DGGARCPLGPKYGALAEEVKPLLQAAQAAHLKVVGVSFHIGSGATNSRAYRGXXXXXXXX 228
           D GARCPLG KYGAL EEV PLLQAAQAA LKVVGVSFHIGS AT+SRAYRG        
Sbjct: 16  DDGARCPLGLKYGALPEEVVPLLQAAQAAGLKVVGVSFHIGSAATHSRAYRGDIAAAKNV 75

Query: 229 XXXXSRLGMPKMNVLNI 245
               +RLGMPKMNVLN+
Sbjct: 76  FETAARLGMPKMNVLNV 92


>30170.m014295 ornithine decarboxylase, putative
          Length = 78

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 40/45 (88%)

Query: 61  MDKWTRALPMVRPFYAVKCNPDRALLGTLASLGSNFDCASRAEIE 105
           MDKWTR LPMVRP YAVKCNP+   +GTLA+LGSNFDCASRA+++
Sbjct: 1   MDKWTRTLPMVRPLYAVKCNPEPTPVGTLATLGSNFDCASRADLK 45


>30131.m007074 diaminopimelate decarboxylase, putative
          Length = 488

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 155/394 (39%), Gaps = 52/394 (13%)

Query: 31  LTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPDRALLGT 88
           + D M+S+      +K PFY+     +   ++ +  AL  +     YA+K N +  +L  
Sbjct: 86  VQDVMESV------EKRPFYLYSKPQITRNVEAYKSALEGLNSIIGYAIKANNNFKILEH 139

Query: 89  LASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTFDSRDEL 148
           L  LG      S  E+   L  G  P++ ++    K    +  AA  GV     DS  +L
Sbjct: 140 LRQLGCGAVLVSGNELRLALRAGYDPKKCIFNGNGKLLEDLVLAAEEGV-FVNVDSEFDL 198

Query: 149 DKIRKWHPLCG----LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQAAQAA- 197
           + I     + G    +L+RI  PD      P         K+G   E+++  L A +A  
Sbjct: 199 ENIVAASRIAGEKINVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 257

Query: 198 -HLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGG-----FTA 251
             LK+VG   H+GS  T    +R                G  +++ LNIGGG     + A
Sbjct: 258 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGF-EIDYLNIGGGLGIDYYHA 316

Query: 252 GLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWI 311
           G         I +  +        L +I EPGR    +   L   + G +  G  + + +
Sbjct: 317 GAVLPTPRDLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNRVTGVKTNGT-KNFIV 373

Query: 312 NDGIYGSMNCLL-------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALD 364
            DG   SM  L+       Y H  +            +P    ++  +  V GP C++ D
Sbjct: 374 IDG---SMAELIRPSLYDAYQHIELV-----------SPAQPIVEVSTFDVVGPVCESAD 419

Query: 365 TVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFN 398
            + KG +LP       LV  + GAY ++  S +N
Sbjct: 420 FLGKGRELPTPSKGAGLVVHDAGAYCMSMASTYN 453