Jatropha Genome Database

JcCB0341981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341981.10 + phase: 0 /partial
         (348 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27538.m000327 Auxin response factor, putative                         626   e-180
30078.m002329 Auxin response factor, putative                         380   e-106
27494.m000045 Auxin response factor, putative                         164   4e-41
29908.m005953 Auxin response factor, putative                          68   8e-12

>27538.m000327 Auxin response factor, putative
          Length = 709

 Score =  626 bits (1614), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/350 (87%), Positives = 324/350 (92%), Gaps = 3/350 (0%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLR+PQH DFPLDGQ Q  SF
Sbjct: 361 VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRLPQHLDFPLDGQFQLPSF 420

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQRFNSHSR 120
           SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLN KLQSG+FLSSLQRFNSHSR
Sbjct: 421 SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLN-KLQSGLFLSSLQRFNSHSR 479

Query: 121 ISESFVKGQTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQQISCSCSTD 180
           +SESF+K  TNSNEN+SCLLTMGNSNTNS+KSDNVKRHQF+LFGQPILTEQQIS SCSTD
Sbjct: 480 VSESFMKSNTNSNENLSCLLTMGNSNTNSEKSDNVKRHQFVLFGQPILTEQQISRSCSTD 539

Query: 181 AVSQVITGKTYSDESPEKAKIHDVLGSAPEKQTSPEKTASTGFSWQS--STETGLDAGHC 238
           AVSQV++ K  SDESPEKAKIHDVLGS PEKQTSPEK+ASTG SWQS  +TETGLDAGHC
Sbjct: 540 AVSQVLSKKLSSDESPEKAKIHDVLGSTPEKQTSPEKSASTGLSWQSLHTTETGLDAGHC 599

Query: 239 KVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKGAVKQTGEEPF 298
           KVFLESEDVGRTLDLSVL SYEEL+S+LANMFGIERSEML HVLYRDA GA++QTG+EPF
Sbjct: 600 KVFLESEDVGRTLDLSVLGSYEELYSRLANMFGIERSEMLHHVLYRDAAGAIRQTGDEPF 659

Query: 299 SVFTKTARRLTILMNPAGSDNNGRPWVTGMRRAENGLEASNKTGPLSIFA 348
           SVF KTA+RLTILMNPA SDN GRPW+ GMR  ENGLEASNK  PLSIFA
Sbjct: 660 SVFAKTAKRLTILMNPASSDNIGRPWIRGMRSTENGLEASNKADPLSIFA 709


>30078.m002329 Auxin response factor, putative
          Length = 702

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/330 (61%), Positives = 242/330 (73%), Gaps = 11/330 (3%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLR+PQH DFPLD Q    +F
Sbjct: 374 VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRMPQHPDFPLDSQFPLPTF 433

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSS----LQRFN 116
           SGN LGP+SP  CL DNTPAG+QGARHA +G+ LSDL+L NKLQ+ +FL+     L    
Sbjct: 434 SGNLLGPTSPFGCLPDNTPAGMQGARHAHYGLPLSDLRL-NKLQTSLFLAGFPPPLDHSA 492

Query: 117 SHSRISESFVKGQTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQQISCS 176
           +HS  S      + + +E++SC+LTM  S  NS K DNVK  Q +LFGQPILTEQQIS S
Sbjct: 493 THSISSNGPTIVKPSMSESVSCVLTMARSTQNSGKPDNVKTPQLVLFGQPILTEQQISLS 552

Query: 177 CSTDAVSQVITGKTYSDESPEK-AKIHDVLGSAPEKQTSPEKTASTGFSW----QSSTET 231
            S D VS V+TG + S+ + +K A   D  GSA  +Q  PE ++  GF W    +  TE 
Sbjct: 553 SSGDTVSPVLTGNSSSEGNLDKIANFSDGSGSALHQQGLPEHSSYEGFQWCKGNRQETEP 612

Query: 232 GLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKGAVK 291
            L+ GHCKVF+ESEDVGRTLDLS+L SY+EL+ KLA+MFGIE SE L++VLYRD  G VK
Sbjct: 613 SLETGHCKVFMESEDVGRTLDLSLLGSYDELYRKLADMFGIENSETLNNVLYRDIAGIVK 672

Query: 292 QTGEEPFSVFTKTARRLTILMNPAGSDNNG 321
             G+EPFS F KTARRLTI+M+ + SDN G
Sbjct: 673 HIGDEPFSDFMKTARRLTIIMD-SSSDNVG 701


>27494.m000045 Auxin response factor, putative
          Length = 590

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           V WDEPDLLQNVKRVSPWLVELV+NMP +HLSPFSPPRKKLR+PQ  DF L GQLQ  SF
Sbjct: 366 VAWDEPDLLQNVKRVSPWLVELVANMPAVHLSPFSPPRKKLRIPQTPDFSLIGQLQMPSF 425

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQ 113
           + N L  +SPLCC+SDN  A IQGARHAQFG+S +DL + NKLQSG   +S Q
Sbjct: 426 TSNTLNLNSPLCCVSDNITARIQGARHAQFGLSSADLHI-NKLQSGSVSASHQ 477



 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 9/154 (5%)

Query: 177 CSTDAVSQVITGKTYSDESPEKAKIH-----DVLGSAPEKQTSPEKTASTG---FSWQSS 228
           C +D ++  I G  ++      A +H         SA  + T+ E ++  G   +     
Sbjct: 438 CVSDNITARIQGARHAQFGLSSADLHINKLQSGSVSASHQTTTLENSSDEGSPSYKEHWK 497

Query: 229 TETGLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKG 288
           T+ GL+ GHCKVF+ESEDVGRTLDLSVL SYEEL+ KLANMF IE S+MLS VLYRDA G
Sbjct: 498 TDLGLETGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFEIENSDMLSSVLYRDAAG 557

Query: 289 AVKQTGEEPFSVFTKTARRLTILMNPAGSDNNGR 322
           A+K+TG+EPFS F KTARRLTIL + +GS+N  R
Sbjct: 558 AIKRTGDEPFSEFLKTARRLTILTD-SGSENIAR 590


>29908.m005953 Auxin response factor, putative
          Length = 603

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 94/222 (42%), Gaps = 43/222 (19%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           V WDEP++LQN KRVSPW VE VS  P +H +   PP KK R P++  F  DG+ +    
Sbjct: 368 VAWDEPEVLQNAKRVSPWQVEYVSPSPPLHGA--FPPAKKFRFPENSGFLTDGEGEL--- 422

Query: 61  SGNPLGPSSPLCCLSDNT-------------PAGIQGARHAQFGIS-------------L 94
                    P+  L+++T             PAG+QGAR   F +               
Sbjct: 423 -------FFPMSGLTNSTMGNINQSLNYHSFPAGMQGARQNPFSVYGLSNFFSEDTSHLC 475

Query: 95  SDLQLNNKLQSGMFLSSLQRFNSHSRISESFVKGQTNSNENISCLLTMGNSNTNSDKSDN 154
           SD    NK+   +   S +  N  S  SE+      +S  +    L +GN   NS K+  
Sbjct: 476 SDNVFGNKMVPKLKTVSTE-LNIGSSPSENLSPDSQSSIHSCDTEL-VGNPGCNSTKA-- 531

Query: 155 VKRHQFLLFGQPILTEQQISCSCSTDAVSQVITGKTYSDESP 196
                F LFG+ I   Q +          +    K Y++++P
Sbjct: 532 -GISSFQLFGKIIHMSQPVESGFEDAGYVEDYVSKRYNEDNP 572