Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.20 - phase: 0 /partial
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28966.m000547 Cysteine protease ATG4B, putative                       164   1e-41

>28966.m000547 Cysteine protease ATG4B, putative
          Length = 489

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 95/119 (79%), Gaps = 4/119 (3%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VVNI RD I ADTSSYHSD +RHIPL SIDPSLAIGFYCRDKDDFDEFC LASKLADDS 
Sbjct: 371 VVNIGRDDIEADTSSYHSDIVRHIPLHSIDPSLAIGFYCRDKDDFDEFCLLASKLADDSQ 430

Query: 61  GAPLFTVAHSHKLPKSVGRTDT-SNDNSGVQEDDSLGV-MPMN-DAE-APVNEDDWQLL 115
           GAPLFTVAH HKLPK V   D  +N++  VQEDDS+ V MP+N DAE     ED+WQLL
Sbjct: 431 GAPLFTVAHCHKLPKPVSHGDMLNNEDDEVQEDDSVNVMMPVNDDAEGGGAQEDEWQLL 489