Jatropha Genome Database

JcCB0341321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.10 + phase: 2 /partial
         (214 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28966.m000548 conserved hypothetical protein                          243   4e-65
27553.m000315 Protein AFR, putative                                    72   2e-13
29841.m002737 conserved hypothetical protein                           62   2e-10
28076.m000422 ubiquitin-protein ligase, putative                       53   1e-07
29917.m001940 conserved hypothetical protein                           50   5e-07

>28966.m000548 conserved hypothetical protein
          Length = 446

 Score =  243 bits (620), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 156/229 (68%), Gaps = 16/229 (6%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D  KNAL SAEVYD++R+EWR+LP+MIE+RDEC G+A++GD++FWVVSGYGTDSQGQFRS
Sbjct: 219 DGQKNALRSAEVYDVDRDEWRMLPDMIEERDECQGLAWDGDSKFWVVSGYGTDSQGQFRS 278

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVNKNEHQWRWFLGGX-------XXX 113
           DAECYDP  G W K  GVWPFSS SPRGAT  V SVN++++QW WFLGG           
Sbjct: 279 DAECYDPTTGSWSKFDGVWPFSSISPRGATATV-SVNRDQNQWWWFLGGEQQQQQLQLQT 337

Query: 114 XXXXIHQNDEIRWELIRSNPVPDC--GKNPFVMNIGYGDNK-NRVFLVXX-----XXXXX 165
               + +N+ +R E++ S PVP C  G NP V+++GY  NK ++VF++            
Sbjct: 338 SGEEVKENENMRLEIVTSIPVPACVTGSNPCVISLGYDANKHHQVFVMSGNGNGNGRRTS 397

Query: 166 XXXXXXXXXXXXXTFILDKDCNNGRTKWNHVHTPAEFSGFPFSACYLTI 214
                         FILD+DCNNG TKWNHVHTP  FSGFPFSA +LTI
Sbjct: 398 SSSLSCSECDCEGAFILDRDCNNGSTKWNHVHTPVGFSGFPFSASHLTI 446


>27553.m000315 Protein AFR, putative
          Length = 337

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 3   HKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRSDA 62
           +K AL+SA  YD+ ++EW  LP M ++RDEC G+     + FWVVSGY TDSQG+F   A
Sbjct: 174 NKTALSSAWSYDVSQDEWTELPRMSQERDECEGVVI--GSEFWVVSGYQTDSQGRFEGSA 231

Query: 63  ECYDPDNGVWHKITGVW 79
           E  +     W ++   W
Sbjct: 232 EVIESGASEWRRVEDAW 248


>29841.m002737 conserved hypothetical protein
          Length = 355

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 35/214 (16%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D  KNAL S   YD+  +EW  LP+M  +RDEC  + F G  +  V+ GY T+ QG+F  
Sbjct: 177 DGEKNALRSGFAYDVANDEWIPLPDMARERDECKAV-FHG-GKLHVIGGYCTEMQGRFEK 234

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVNKNEHQWRWFLGGXXXXXXXXIHQ 120
            AE +D     W+ +   +  ++  PR  T ++              G         +  
Sbjct: 235 SAEVFDAATWKWNDVQDDFLLAAICPR--TCVIGDD-----------GLYICHGGDVLAL 281

Query: 121 NDEIRWELIRSNPVPDCGKNPFVMNIGYGDNKNRVFLVXXXXXXXXXXXXXXXXXXXXTF 180
                W+ +   P   C       N+ Y        LV                     +
Sbjct: 282 KGGATWQAVAKLPANVC-------NVAYVSTWRGKLLV---------IGSEALGEPHIAY 325

Query: 181 ILDKDCNNGRTKWNHVHTPAEFSGFPFSACYLTI 214
            LD +      KW  + TP ++SG   S CYL I
Sbjct: 326 TLDSN----SYKWAKLETPKQYSGHVQSGCYLEI 355


>28076.m000422 ubiquitin-protein ligase, putative
          Length = 376

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D++ N LNSAE+YD    +W +LPNM   R  C G  F  D +F+V+ G  + +     +
Sbjct: 182 DKNGNVLNSAELYDSSTGKWEMLPNMHSPRRLCSG--FFMDGKFYVIGGMSSPTVSL--T 237

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVNKNEHQWRWFLGGXXXXXXXXIHQ 120
             E YD +   W  I G++P  + + + A  +V+ V+   +   +            + +
Sbjct: 238 CGEEYDFETRKWRMIEGMYPNVNRAAQ-APPLVAVVDNQLYAVEYL--------TNMVKK 288

Query: 121 NDEIR--WELIRSNPV 134
            D+++  WE++   PV
Sbjct: 289 YDKVKNTWEVLGRLPV 304


>29917.m001940 conserved hypothetical protein
          Length = 385

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 8   NSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYG----TDSQGQF---RS 60
           +SAEVYD   +EW  LP+M   R +C G+ F+G  +  VV G+     +D    F   RS
Sbjct: 157 SSAEVYDPIADEWTPLPSMSTLRYKCVGVTFQG--KIHVVGGFAVRVDSDKTEPFVTERS 214

Query: 61  DAECYDPDNGVWHKITGVW 79
            AE YD   G W  + G+W
Sbjct: 215 SAEVYDTRAGKWDLVAGMW 233