Jatropha Genome Database

JcCB0340941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.10 + phase: 0 
         (105 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30027.m000821 cytoplasmic dynein light chain, putative                149   3e-37
29912.m005505 cytoplasmic dynein light chain, putative                 98   7e-22
30146.m003576 cytoplasmic dynein light chain, putative                 98   1e-21
28320.m001104 axonemal dynein light chain, putative                    85   7e-18
30074.m001420 axonemal dynein light chain, putative                    73   3e-14
30147.m014228 axonemal dynein light chain, putative                    73   3e-14
29973.m000393 cytoplasmic dynein light chain, putative                 52   4e-08
29726.m004070 cytoplasmic dynein light chain, putative                 50   3e-07

>30027.m000821 cytoplasmic dynein light chain, putative
          Length = 112

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 85/105 (80%)

Query: 1   MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
           MLEGKAVVGETDMLQTMQQDAL +AAKALD FDVTE+T+IARFIKK+FD   G GWQCIV
Sbjct: 1   MLEGKAVVGETDMLQTMQQDALDVAAKALDFFDVTEATEIARFIKKEFDGTYGAGWQCIV 60

Query: 61  GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQVDEANVFPALD 105
           G +FGSFVTH  GCFI+F +GS+AI+LFR +     +   F AL+
Sbjct: 61  GRDFGSFVTHCCGCFIHFQVGSLAILLFRGSAGPEPKPAQFTALE 105


>29912.m005505 cytoplasmic dynein light chain, putative
          Length = 93

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 64/93 (68%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKA+V ETDM   MQ  A+  A++ALD++DV++   IA  IKK+FD   G GWQC+V
Sbjct: 1  MLEGKAMVKETDMPVKMQMQAMACASQALDVYDVSDCIFIAAHIKKEFDKKYGGGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVN 93
          G+ FG F TH  G FIYF + S+  ++F+ A +
Sbjct: 61 GSSFGGFFTHTEGTFIYFALESLNFLIFKGASS 93


>30146.m003576 cytoplasmic dynein light chain, putative
          Length = 112

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 1   MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
           MLEGKA++ +TDM   MQ  A+  A++ALD++DV +   IA  IKK+FDM  G GWQC+V
Sbjct: 1   MLEGKALIEDTDMPVKMQIQAMACASQALDLYDVLDCKSIAAHIKKEFDMKYGGGWQCVV 60

Query: 61  GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQVDEANVFPAL 104
           G+ FG F TH  G FIYF + ++  ++F+ A +        P L
Sbjct: 61  GSNFGCFFTHSKGSFIYFTLETLNFLIFKGASSPSALEEKLPDL 104


>28320.m001104 axonemal dynein light chain, putative
          Length = 184

 Score = 84.7 bits (208), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query: 11  TDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTH 70
           TDM   MQ  A   A +  D  D   S  IA  IKK+FD + GP W CIVG+ FGSFVTH
Sbjct: 96  TDMPGFMQIHAFRCARRTYDSLDKFSSKHIAYNIKKEFDKVYGPAWHCIVGSSFGSFVTH 155

Query: 71  YHGCFIYFNIGSIAIMLFRCAVNQVDEAN 99
             GCF+YF++  + I++F+  V +    N
Sbjct: 156 STGCFLYFSMEKLYILVFKTKVQKAQLQN 184


>30074.m001420 axonemal dynein light chain, putative
          Length = 303

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 6   AVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFG 65
           A +   DM   MQ  A+  A K  D  +   S  +A  +KK+FD + GP W CIVGT FG
Sbjct: 212 AKIVSVDMPPFMQIHAVDCARKTHDSLEKFTSKTLALTLKKEFDGIYGPAWHCIVGTSFG 271

Query: 66  SFVTHYHGCFIYFNIG-SIAIMLFRCAVNQVD 96
           SFVTH  G F+YF++   + ++LF+  V + D
Sbjct: 272 SFVTHSVGGFLYFSMDQKLYVLLFKTTVQRAD 303


>30147.m014228 axonemal dynein light chain, putative
          Length = 159

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 10  ETDMLQTMQQDALHLAAKALD--IFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSF 67
             +M   MQ+ A       LD  +      T IA  +KK+FD + GP W CIVG  FGSF
Sbjct: 55  SAEMPGAMQERAFRCTRAVLDANLEKKLNPTHIAMCLKKEFDAVYGPAWHCIVGKSFGSF 114

Query: 68  VTHYHGCFIYFNIGSIAIMLFRCAVNQV 95
           VTH  G F+YF++  ++ +LF+  V  V
Sbjct: 115 VTHSSGGFVYFSVDKLSFLLFKTEVRPV 142


>29973.m000393 cytoplasmic dynein light chain, putative
          Length = 200

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKK 46
          MLEGKA+V ETDM + MQ   + LA +ALD+ +V++   IAR+IK+
Sbjct: 22 MLEGKAIVQETDMPEVMQSQVMELAYQALDLHEVSDCQSIARYIKQ 67



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 41  ARFIKKDFDMLRGPGWQCIVGTEFGSFVTHYHGCFIYFNIGSIAIMLFR 89
           ++  ++ FD   G  W C+VG EFGS +TH  G FI+F +  +  ++F+
Sbjct: 128 SKLAEQKFDEAHGAAWHCVVGKEFGSCITHLCGSFIFFRVEMLEFLIFK 176


>29726.m004070 cytoplasmic dynein light chain, putative
          Length = 126

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 5  KAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEF 64
          K ++   DM   MQ++A+ +A  A +  +V +  D+A  IKK+FD   GP W CIVG  F
Sbjct: 35 KIIIKNADMKVDMQKEAVDIAIAAFEKNNVEK--DVAEHIKKEFDRRHGPTWHCIVGRNF 92