Jatropha Genome Database

JcCB0339681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0339681.10 + phase: 0 /partial
         (180 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30006.m000282 DNA binding protein, putative                           180   4e-46

>30006.m000282 DNA binding protein, putative
          Length = 440

 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 101/136 (74%), Gaps = 3/136 (2%)

Query: 46  AFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLTS 105
            F   ISKY GLSSQWDSSF RMPGSEYF SINYGAADD A E++YVGSLCFERKIDLTS
Sbjct: 159 GFSRGISKYRGLSSQWDSSFGRMPGSEYFSSINYGAADDPAAESEYVGSLCFERKIDLTS 218

Query: 106 YIKWWGSNETRQXXXXXXXXXXXXHGYAEDVGELKTSEWAVQPTE-YQMPCLGMPIDGKS 164
           YI+WWG N+TR+            HGY ED+ ELK+SEWAVQ TE YQMP LGMP +GK 
Sbjct: 219 YIRWWGFNKTRE--SVSKSSDERKHGYGEDISELKSSEWAVQSTEPYQMPRLGMPDNGKK 276

Query: 165 TKGYAFSALSILSKSA 180
            K    SALSILS SA
Sbjct: 277 HKCSKISALSILSHSA 292