Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (198 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006276 rab geranylgeranyl transferase alpha subunit, puta...   216   4e-57

>29908.m006276 rab geranylgeranyl transferase alpha subunit,
           putative
          Length = 696

 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 130/155 (83%)

Query: 4   NHLSIKNEHEPAATTWQLKIIAE*VENFRELSDCKIGKLTLARLLTAHDSLMSCNELVHS 63
           ++LSIK+++EPAA TWQ KIIAE ++ FRELSDCKIGKLTLARLL+AHD+L+S ++  HS
Sbjct: 414 DNLSIKSKNEPAAATWQEKIIAEEIKLFRELSDCKIGKLTLARLLSAHDALVSSDKSAHS 473

Query: 64  EEVLRLYSDSMKLDPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMC 123
           EEVLRLY   +KLDP+H++YYKD   L L   V S +ES++SRCFHY+D+TS S  YP+C
Sbjct: 474 EEVLRLYCQLIKLDPTHARYYKDVHSLALLQQVTSSQESVLSRCFHYRDVTSLSSGYPIC 533

Query: 124 LRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIEG 158
           LRLN LSLSRIG+VEKLLWVQM DLS NELQSIEG
Sbjct: 534 LRLNNLSLSRIGAVEKLLWVQMLDLSCNELQSIEG 568