Jatropha Genome Database

JcCB0337131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337131.10 - phase: 0 /partial
         (255 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004516 chromatin assembly factor 1, subunit A, putative        317   4e-87

>29929.m004516 chromatin assembly factor 1, subunit A, putative
          Length = 823

 Score =  317 bits (812), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 166/251 (66%), Positives = 194/251 (77%), Gaps = 2/251 (0%)

Query: 1   GVQVDRMETELSVEKARGSPSSKQDSESEEFCKLLQQQKYLNNVTETALRKNQPLIILNL 60
           GV+VDR+ET+LSV++ARG+PS KQ+ E+EEF  LLQ QKYLNN+TE ALRKNQPLIILNL
Sbjct: 575 GVEVDRLETDLSVDEARGTPSCKQELENEEFRTLLQWQKYLNNLTEIALRKNQPLIILNL 634

Query: 61  MHEKVPLFVAEDLTGTSKLEWTCLEALRVRKFPGGPSMEISTVDIQAEAREACVSNGKTN 120
           MHEK PL  A+DLTGT K E  CLEAL +R  PGG  +EIS VD+ AE ++AC+S  K +
Sbjct: 635 MHEKDPLSAAKDLTGTFKSEKMCLEALSMRMNPGGLPVEISVVDMLAEDQDACLSIVKAS 694

Query: 121 STHVSPAAAIPELDMPIVVSTIQSCSQSINKVVDSLQQKFPTVSKSQLRNKVREISDFVD 180
           +TH+S    I E DMPIVVS IQS S SINKVV+ LQQKFPTVSKSQ+RNKVREISDFVD
Sbjct: 695 NTHISAVTTIQESDMPIVVSAIQSGSHSINKVVELLQQKFPTVSKSQIRNKVREISDFVD 754

Query: 181 NRWQVKKEVLNEVGISISPPGKSRGRMPNISTFFSKRCLPPTGKSMXXXXXXXXXXLKAG 240
           NRWQVKKE+L++VGISISP  K  GRM NIS FFSKRCLPP  +S+           K G
Sbjct: 755 NRWQVKKEILDKVGISISPE-KGGGRMQNISKFFSKRCLPPAAESINPEATSPEPSRKPG 813

Query: 241 CSEVEGQRGCT 251
            S V+GQ+ CT
Sbjct: 814 -SAVQGQQACT 823