Jatropha Genome Database

JcCB0336621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0336621.10 - phase: 0 /partial
         (140 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30142.m000632 Rho GTPase activator, putative                          285   6e-78
29908.m006240 conserved hypothetical protein                          226   2e-60

>30142.m000632 Rho GTPase activator, putative
          Length = 821

 Score =  285 bits (728), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 138/140 (98%), Positives = 139/140 (99%), Gaps = 1/140 (0%)

Query: 1   MQSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLY 60
           MQSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLY
Sbjct: 1   MQSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLY 60

Query: 61  EWKTALEHALAQAPSAALVMGHNGIFRSDTNEAIEGSFHQWRDKRPVKSLVVGRPILLAL 120
           EWKTALEHALAQAPSAALVMGHNGIFRSDTNEA EGSFHQWRDKRPVKSLVVGRPILLAL
Sbjct: 61  EWKTALEHALAQAPSAALVMGHNGIFRSDTNEA-EGSFHQWRDKRPVKSLVVGRPILLAL 119

Query: 121 EDIDGGPSFLEKALRFLEKF 140
           EDIDGGPSFLEKALRFLE+F
Sbjct: 120 EDIDGGPSFLEKALRFLERF 139


>29908.m006240 conserved hypothetical protein
          Length = 980

 Score =  226 bits (576), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 125/141 (88%), Gaps = 4/141 (2%)

Query: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62
           SA+PQ+G EVNLTLGGIDLNNSGSVVV+ DKKLLTVLFPDGRDGRAFTLKAET EDLY+W
Sbjct: 86  SAVPQKGSEVNLTLGGIDLNNSGSVVVKSDKKLLTVLFPDGRDGRAFTLKAETMEDLYDW 145

Query: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNEAIEGSFHQW----RDKRPVKSLVVGRPILL 118
           KTALE+ALAQAPSAALVMG NGIF++D  + +EGSF Q     +DK P K++V+GRP+LL
Sbjct: 146 KTALENALAQAPSAALVMGQNGIFKNDPTDCVEGSFDQCVLPVKDKVPGKAMVIGRPVLL 205

Query: 119 ALEDIDGGPSFLEKALRFLEK 139
           ALED+DG PSFLEKALR++E+
Sbjct: 206 ALEDVDGTPSFLEKALRYIEE 226