Jatropha Genome Database

JcCB0335101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0335101.10 - phase: 0 /pseudo/partial
         (349 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006268 DNA binding protein, putative                           226   2e-59

>29908.m006268 DNA binding protein, putative
          Length = 608

 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/351 (44%), Positives = 197/351 (56%), Gaps = 28/351 (7%)

Query: 10  LKQRWAIIRKRQGTSNLGGNTSSVQLIEEQRAARHAMNMALDPPVKNTFTNS-SGETSSA 68
           L QRWAIIRKR G  N  GNTS VQL EE RAARHAMN+ALDPPVKN FTN+ SGE + A
Sbjct: 245 LSQRWAIIRKRHGNWNPVGNTSGVQLSEEWRAARHAMNLALDPPVKNKFTNNISGEATPA 304

Query: 69  QHRFQYPFATKSSVMGTLVPGAKPQVKMSNLVKPDIGSDLXXXXXXXXXXXXXTQSDXXX 128
           QH+ Q PFA KSS M  L    K Q+ +    KPD+ SD              TQSD   
Sbjct: 305 QHQSQRPFAAKSSPMVPLGSAPKSQIAVKRPAKPDLSSDPVRATAVAAGARIATQSDAAS 364

Query: 129 XXXXXXXXXXVHIMSSSGSSIKPALPAGSSGNPEAYPNVR-----AASLSTQAAASPSGA 183
                     VHIM + GSS+K ALP G+S + EA+PNV      A S ST    SPS  
Sbjct: 365 LLKAAQAKNAVHIMPTGGSSMKSALPGGASNHSEAHPNVHTNDLAAGSRSTLPVVSPSAI 424

Query: 184 HPALGKACLPTTQQAPSTSGAALNLLSEQANTELPPKQDSDNAKHVETLSKDV----AIE 239
            PA       T Q  PS S  A N+ ++Q N ELP ++D++ A  ++ LS+D       E
Sbjct: 425 RPAASS----TVQHIPSISDTAKNISAKQFNAELPARKDTETAGAIKILSEDAKEQQVKE 480

Query: 240 HG------------EEKSAVSQNQDAEVKTEV-DVEQSNASPNLEVAESDKMDVLENQAE 286
           HG            +E+ A   N++AE KT++   E S+A+  LE+A+S+ MDVL   AE
Sbjct: 481 HGACVSGNELSKQVQEEKAAFPNREAECKTQLAVSESSSAASKLEMADSNMMDVLGKPAE 540

Query: 287 PHQNSKSDSIKGLSIVKDENRSAIRENGNSQIISAKLADLPSMETDECSEK 337
             QNS S+ I  LS+  +++ SAI+ NG+ QI S K  D  SM  D+ SEK
Sbjct: 541 GSQNSNSNIITCLSVKTEDSMSAIQVNGDKQITSDK-PDRISMAIDKFSEK 590