Jatropha Genome Database

JcCB0334901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.20 - phase: 1 /partial
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000492 nucleolysin tia-1, putative                             112   4e-26

>29727.m000492 nucleolysin tia-1, putative
          Length = 422

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 57/68 (83%)

Query: 6   GLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVAA 65
           GLSATDLLTYERQLAMGKMGGVHALMHPQGQH LKQ          SQAIYDGGFQ+VAA
Sbjct: 355 GLSATDLLTYERQLAMGKMGGVHALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAA 414

Query: 66  AQQLMYYQ 73
           AQQLMYYQ
Sbjct: 415 AQQLMYYQ 422