Jatropha Genome Database

JcCB0334901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.10 + phase: 0 /pseudo/partial
         (209 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000491 FLU, putative                                           241   1e-64

>29727.m000491 FLU, putative
          Length = 332

 Score =  241 bits (616), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 130/142 (91%), Gaps = 2/142 (1%)

Query: 70  SSAPLLE--PVGSRIQDNEVIVDPRKQQLIARLKTGKNFLRNQDPEKALAEFKAALDLAQ 127
           S AP L   PVGSRI +NEVIVDPRKQ+LI+RLK+GK FLRNQDPEKA  EFKAAL+LA+
Sbjct: 191 SYAPTLSYAPVGSRIAENEVIVDPRKQELISRLKSGKKFLRNQDPEKAFEEFKAALELAR 250

Query: 128 SMKDPIEEKKAARGLGASLQRQGKYQEAIKYHSMVLAISQRVGEDSGNTEAYGAIADCYT 187
           S+KDP+EEKKAARGLGASLQRQGKY+EAI YHSMVLAISQ+ GE+SGNTEAYGAIADCYT
Sbjct: 251 SLKDPMEEKKAARGLGASLQRQGKYREAINYHSMVLAISQKEGEESGNTEAYGAIADCYT 310

Query: 188 EIGDLERAGKFYDQYIARLEKD 209
           E+GDLERAGKFYD YIARLEKD
Sbjct: 311 ELGDLERAGKFYDNYIARLEKD 332