Jatropha Genome Database

JcCB0333371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0333371.10 + phase: 0 /short
         (48 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28176.m000270 acyl-CoA dehydrogenase, putative                         70   2e-13

>28176.m000270 acyl-CoA dehydrogenase, putative
          Length = 440

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 9  DLEESAKSSYFNLPPLDVSVAFPQATPASIFPPCSKN 45
          DL+ S KSSYFNLPPL+VS+AFPQATPASIFPPC+ +
Sbjct: 12 DLDHSQKSSYFNLPPLNVSIAFPQATPASIFPPCASD 48