Jatropha Genome Database

JcCB0331671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0331671.10 - phase: 0 /partial
         (94 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29776.m000488 isoamylase, putative                                    180   1e-46
29908.m006089 isoamylase, putative                                     92   7e-20
28153.m000287 isoamylase, putative                                     63   3e-11

>29776.m000488 isoamylase, putative
          Length = 795

 Score =  180 bits (457), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/92 (91%), Positives = 87/92 (94%)

Query: 3   LNETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGN 62
            N + CGNTFNCNHPIVRQFILDCLRYWV+EMHVDGFRFDLASIMTRGSSLWDAVNVFGN
Sbjct: 384 YNYSGCGNTFNCNHPIVRQFILDCLRYWVLEMHVDGFRFDLASIMTRGSSLWDAVNVFGN 443

Query: 63  PVEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
           P+EGDLLTTGTPLSSPPLIDMISNDPIL  VK
Sbjct: 444 PIEGDLLTTGTPLSSPPLIDMISNDPILHGVK 475


>29908.m006089 isoamylase, putative
          Length = 783

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 56/92 (60%), Gaps = 19/92 (20%)

Query: 3   LNETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGN 62
           LN + CGNT NCNHP+V + IL+ LR+WV E HVDGFRFDLAS++ RG            
Sbjct: 407 LNFSGCGNTLNCNHPVVMELILESLRHWVTEYHVDGFRFDLASVLCRG------------ 454

Query: 63  PVEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
                  T GTPL++PP+I  I+ D IL   K
Sbjct: 455 -------TDGTPLNAPPVIRAIAKDAILSRCK 479


>28153.m000287 isoamylase, putative
          Length = 872

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 10  NTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGNPVEGDLL 69
           N  NCN+PIV++ ILD L++WV E H+DGF F  AS +  G                   
Sbjct: 493 NALNCNYPIVQRMILDSLQHWVTEFHIDGFCFINASALLTG------------------- 533

Query: 70  TTGTPLSSPPLIDMISNDPILREVK 94
             G  LS PPL++ I+ DPIL + K
Sbjct: 534 FHGEHLSRPPLVEAIAFDPILSKTK 558