Jatropha Genome Database

JcCB0331501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0331501.10 + phase: 0 /partial
         (84 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                              160   1e-40
29790.m000813 mads box protein, putative                               85   8e-18
29929.m004629 mads box protein, putative                               78   1e-15
30174.m009080 mads box protein, putative                               75   9e-15
30147.m014137 mads box protein, putative                               72   4e-14
30138.m003939 mads box protein, putative                               68   9e-13
30174.m009079 mads box protein, putative                               63   3e-11
30138.m003941 mads box protein, putative                               60   2e-10
29790.m000814 mads box protein, putative                               59   6e-10
30170.m013818 mads box protein, putative                               57   1e-09
30026.m001501 mads box protein, putative                               54   2e-08
29596.m000699 mads box protein, putative                               50   2e-07
29804.m001536 mads box protein, putative                               50   3e-07
30147.m014133 mads box protein, putative                               47   2e-06
30190.m011098 mads box protein, putative                               45   5e-06
28333.m000571 mads box protein, putative                               45   6e-06

>30174.m008934 mads box protein, putative
          Length = 244

 Score =  160 bits (405), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/84 (92%), Positives = 80/84 (95%)

Query: 1   TTKTLERYQRCCFTPQDNSIERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKE 60
           TTKTLERYQRCCFTPQDNSIERETQ+WYQEV KLKAKYESLQRTQRHLLGEDLGPLSVKE
Sbjct: 62  TTKTLERYQRCCFTPQDNSIERETQNWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVKE 121

Query: 61  LQNLEKQLEGALALARQRKVFICL 84
           LQNLEKQLEGALALARQRK  I +
Sbjct: 122 LQNLEKQLEGALALARQRKTQIMI 145


>29790.m000813 mads box protein, putative
          Length = 180

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 3  KTLERYQRCCFTPQD-NSIERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKEL 61
          KTLERYQ+C +   + N   +E +S Y+E  KLK ++ESLQ+TQR+LLGEDLGPLS KEL
Sbjct: 3  KTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQKTQRNLLGEDLGPLSTKEL 62

Query: 62 QNLEKQLEGALALARQRKVFICL 84
          + LE+QLE +L L R  +    L
Sbjct: 63 EQLERQLESSLKLVRSTRTQFML 85


>29929.m004629 mads box protein, putative
          Length = 182

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 56/73 (76%), Gaps = 3/73 (4%)

Query: 3  KTLERYQRCCF-TPQDNSIERETQ--SWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVK 59
          KTLERYQ+C +  P+ N   RE    S  QE  KLKA+YE+LQR+QR+LLGEDLGPLS K
Sbjct: 6  KTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSK 65

Query: 60 ELQNLEKQLEGAL 72
          +L++LE+QL+ +L
Sbjct: 66 DLESLERQLDMSL 78


>30174.m009080 mads box protein, putative
          Length = 198

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 2   TKTLERYQRCCFTP-QDNSIERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKE 60
            KT+E+YQRC +   + N    +TQ+ YQE  KLK++ E+LQR+QRH LGEDLG L  K+
Sbjct: 23  AKTIEKYQRCSYGALEANQSVHDTQNSYQEYLKLKSRVEALQRSQRHFLGEDLGNLGTKD 82

Query: 61  LQNLEKQLEGALALARQRKVFICL 84
           L+ LE QL+ +L   R  K    L
Sbjct: 83  LEQLEHQLDSSLKHVRLTKSNFML 106


>30147.m014137 mads box protein, putative
          Length = 154

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 23 ETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKV 80
          + Q+ Y EV +LK KYESLQ  Q HLLGE+LGPLSVKELQ +EKQL+  L+ ARQRK 
Sbjct: 3  QIQNLYHEVTRLKTKYESLQCCQSHLLGEELGPLSVKELQKIEKQLDRTLSQARQRKT 60


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 3   KTLERYQRCCFTP-QDNSIERETQ-SWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKE 60
           + LERY+R  +   Q  + + ET  SW  E AKLKA+ E LQR QRH +GE+L  L++K+
Sbjct: 65  RILERYERYSYAERQLLATDTETNGSWTLEHAKLKARVEVLQRNQRHFMGEELDTLTLKD 124

Query: 61  LQNLEKQLEGALALARQRK 79
           LQNLE+Q++ AL   R RK
Sbjct: 125 LQNLEQQIDSALKHVRSRK 143


>30174.m009079 mads box protein, putative
          Length = 180

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 50/83 (60%), Gaps = 10/83 (12%)

Query: 3  KTLERYQRCCFTPQD------NSIERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPL 56
          + LERY+R  +  +       NS E    +W  E  +LKAK E LQR  RH LGEDL  L
Sbjct: 3  RILERYERYSYAERQLVATDLNSQE----NWTLEYNRLKAKVELLQRNHRHYLGEDLDSL 58

Query: 57 SVKELQNLEKQLEGALALARQRK 79
          ++KELQNLE+QL+ AL   R RK
Sbjct: 59 TLKELQNLEQQLDTALKHIRTRK 81


>30138.m003941 mads box protein, putative
          Length = 166

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 40/60 (66%)

Query: 25 QSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKVFICL 84
          Q+ YQE  KLKA+ E LQR+QR+LLGEDL PL  KEL+ LE QLE +L   R  K    L
Sbjct: 10 QNNYQEYLKLKARVEVLQRSQRNLLGEDLAPLDTKELEQLEHQLETSLKHIRSTKTQFIL 69


>29790.m000814 mads box protein, putative
          Length = 188

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 4/78 (5%)

Query: 5  LERYQRCCFTPQDNSIERETQ---SWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKEL 61
          L+RY+RC  + +  ++  +++   +W  E  KL A+ E L+R+ R+  G+DLGP+S++EL
Sbjct: 5  LDRYERCA-SAEKQAVPNDSEKQGTWCLEYPKLVARIEILERSLRNFAGKDLGPMSLREL 63

Query: 62 QNLEKQLEGALALARQRK 79
          Q+LE+Q++ AL   R RK
Sbjct: 64 QHLEQQIDTALKRVRSRK 81


>30170.m013818 mads box protein, putative
          Length = 287

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 4   TLERYQRCCFTPQDNS--IERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKEL 61
           T+ERY++ C    + S   E   Q + QE AKL+ + + LQ + RHL+G+ L  L+VKEL
Sbjct: 110 TIERYKKACSDSSNTSSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKEL 169

Query: 62  QNLEKQLEGALALARQRK 79
           + LE +LE  +   R +K
Sbjct: 170 KQLENRLERGITRIRSKK 187


>30026.m001501 mads box protein, putative
          Length = 177

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 4  TLERYQRCCF-TPQDNSI-ERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKEL 61
          T++RY++    +    S+ E   Q + QE AKL+ +  +LQ + RH+LGE LG L++K+L
Sbjct: 17 TIDRYKKVSTDSSTTGSVSEANAQFYQQEAAKLRVQIGNLQNSNRHMLGESLGALNLKDL 76

Query: 62 QNLEKQLEGALALARQRK 79
          + LE +LE  ++  R +K
Sbjct: 77 KGLEGRLEKGISRIRSKK 94


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 23  ETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK 79
           E + W +E A L+ + ++LQ   R ++GE+L  LS+KELQNLE +LE +L   R +K
Sbjct: 85  EVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLSIKELQNLEGRLEMSLRGVRMKK 141


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 23  ETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK 79
           E + W +E A L+ + + LQ + R L+GE+L  LS K+LQNLE QLE +L   R +K
Sbjct: 112 EIKFWQREAASLRKELQYLQESHRQLMGEELSGLSAKDLQNLENQLEMSLKGVRMKK 168


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 3   KTLERYQRCCFTPQD-NSIERE--TQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVK 59
           KT+ERY++     Q   S+ +E   Q   +E A L  K E L+ +QR LLG+ L   S++
Sbjct: 64  KTIERYRKHAKEVQAAGSVAKEQHVQELTEESAALVKKIEELEISQRKLLGQGLSSCSIE 123

Query: 60  ELQNLEKQLEGALALARQRKV 80
           ELQ +  QLE +L+  R RKV
Sbjct: 124 ELQEIHSQLERSLSNIRSRKV 144


>30190.m011098 mads box protein, putative
          Length = 154

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 3  KTLERYQRCCFTPQDNSIERET------QSWYQEVAKLKAKYESLQRTQRHLLGEDLGPL 56
          KT+ERYQ+     +D  I  +T      Q   ++   L  K E L+ ++R LLG+ L P 
Sbjct: 7  KTIERYQK---KAKDLGISIKTVQECTSQHMKEDTFSLAKKIELLEVSKRKLLGDGLEPC 63

Query: 57 SVKELQNLEKQLEGALALARQRK 79
          SV ELQ LE QLE +L   R RK
Sbjct: 64 SVDELQQLENQLERSLTRIRTRK 86


>28333.m000571 mads box protein, putative
          Length = 173

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 23 ETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK 79
          E + W +E A L+ +  +LQ + R  +GE L  LSVK+LQ+LE QLE +L   R +K
Sbjct: 24 EVKFWQREAAVLRQQLHNLQESHRQFMGEQLYGLSVKDLQSLENQLEMSLRGIRTKK 80