Jatropha Genome Database

JcCB0329751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329751.10 - phase: 0 /pseudo
         (163 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30026.m001452 wd40 protein, putative                                   92   1e-19
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form...    69   1e-12
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form...    67   3e-12
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form...    67   4e-12
29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form...    65   2e-11
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form...    59   9e-10
29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form...    57   3e-09

>30026.m001452 wd40 protein, putative
          Length = 1458

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 50/76 (65%)

Query: 76  TMASQLNNSQDVGIHARHVSSVSTVDSEMNDEYGNPIWKNRVESWKDXXXXXXXXXXXXX 135
           T  S LNN QDVGIHARHVSSVSTVDSEMNDE+GNPIWKNRVESWKD             
Sbjct: 559 TTTSHLNNPQDVGIHARHVSSVSTVDSEMNDEFGNPIWKNRVESWKDKKHKKKKSAPKPE 618

Query: 136 XXXXXXXXXQQMEDKP 151
                    QQME+KP
Sbjct: 619 KEPAEIPPEQQMEEKP 634


>29482.m000171 Cellulose synthase A catalytic subunit 3
          [UDP-forming], putative
          Length = 977

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          +C  CG+++GL  +G+ FVAC++C FP C+ C+EYE +E  +VC +C + Y
Sbjct: 36 VCEICGDEIGLTVDGDLFVACNECGFPACRPCYEYERREGTQVCPQCKTRY 86


>29761.m000416 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 899

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%)

Query: 3  ESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          ++ + IC  C + VG   NGEPFVACH C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 17 QNAIQICQICSDNVGTTVNGEPFVACHVCAFPVCRPCYEYERKDGNQSCPQCKTKY 72


>29637.m000754 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1044

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 3  ESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          +SG   C  CG+ +G+  +G  FVACH C FP+CK C+EYE  E  + C +C + Y
Sbjct: 24 QSGKVSCRVCGDDIGVKEDGTLFVACHVCRFPVCKPCYEYERSEGNQCCPQCNTRY 79


>29863.m001055 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1095

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+++ +  +GEPFVAC++C FP+C+ C+EYE +E  + C +C + Y
Sbjct: 38 ICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNRACPQCKTIY 88


>29606.m000101 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1085

 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 5  GVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          G  +C  C + VG   +G+PFVAC+ C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 16 GRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69


>29848.m004649 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1083

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 9  CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          C  CG+ VG   +G+ FVAC++C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 39 CQICGDNVGHTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88