Jatropha Genome Database

JcCB0329631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329631.10 + phase: 2 /pseudo/partial
         (249 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000495 Aspartate carbamoyltransferase 2, chloroplast prec...   263   7e-71

>29762.m000495 Aspartate carbamoyltransferase 2, chloroplast
           precursor, putative
          Length = 360

 Score =  263 bits (671), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 126/139 (90%), Positives = 131/139 (94%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAKYQDVKIYFVSP+VVKMKDDIKDYL S+GV WEESADL+EVASKCDVVYQTRI
Sbjct: 222 SLAYLLAKYQDVKIYFVSPDVVKMKDDIKDYLASRGVEWEESADLMEVASKCDVVYQTRI 281

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           QRERFGERIDLYEEARGKYIVD DVLNVMQKHAVVMHPLPRLDEIT+DVD DPR AYFRQ
Sbjct: 282 QRERFGERIDLYEEARGKYIVDSDVLNVMQKHAVVMHPLPRLDEITVDVDVDPRAAYFRQ 341

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AKNGLYIRMALLKLLLVGW
Sbjct: 342 AKNGLYIRMALLKLLLVGW 360