Jatropha Genome Database

JcCB0320291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320291.10 - phase: 0 /partial
         (260 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29696.m000106 actin binding protein, putative                         414   e-116
29848.m004543 DNA binding protein, putative                           361   e-100
30138.m004035 conserved hypothetical protein                          328   1e-90
29827.m002591 DNA binding protein, putative                           290   3e-79

>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 191/260 (73%), Positives = 213/260 (81%), Gaps = 5/260 (1%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFRKLFYRKPPDGLLEICERVYVFD+CFT DAWQEENY  YMSGIVGQLK+HFPDASF
Sbjct: 1   MALFRKLFYRKPPDGLLEICERVYVFDHCFTTDAWQEENYKKYMSGIVGQLKQHFPDASF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGVQN 120
           L FNFREGE  SQL+ ++SE++MTIMEYPRQYEGCPLL+MEVIHHFLRSGESWLSLG  N
Sbjct: 61  LAFNFREGETPSQLAHLLSEFDMTIMEYPRQYEGCPLLKMEVIHHFLRSGESWLSLGQHN 120

Query: 121 LLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXXX 180
           LLLMHCERGGWPVLAF+LA+LL+Y KQ+SGE KTLDMIYR                    
Sbjct: 121 LLLMHCERGGWPVLAFVLASLLIYTKQYSGEQKTLDMIYRQAPRELVHFLSPLNPVPSQL 180

Query: 181 RYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTNDV 240
           RYLQYVSRRNVASEWPPL+R L L+C+ILRFIP+FDG GGCRPVFRIYGH  S ++ N V
Sbjct: 181 RYLQYVSRRNVASEWPPLDRTLKLDCVILRFIPNFDGYGGCRPVFRIYGHAPSDESDNVV 240

Query: 241 CSTPRNSTPRKGETVRNYKQ 260
           C      TP+KG+ +R YKQ
Sbjct: 241 C-----LTPKKGKIIRAYKQ 255


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/262 (64%), Positives = 198/262 (75%), Gaps = 6/262 (2%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFRK FYRKPPDGLLEI ERVYVFD CFT +   ++ Y  Y+ GIV QL++ FPD+SF
Sbjct: 1   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEILDDDEYKIYIGGIVSQLRDQFPDSSF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGVQN 120
           +VFNFREGE QS +  I+SEY+MT+M+YPR YEGCPLL ME+IHHFLRS ESWLSL  QN
Sbjct: 61  MVFNFREGEHQSLIGSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLLKQN 120

Query: 121 LLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXXX 180
           +LLMHCERGGWPVLAFMLA+LL+YRKQFSGE KTLDMIY+                    
Sbjct: 121 VLLMHCERGGWPVLAFMLASLLIYRKQFSGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 180

Query: 181 RYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTNDV 240
           RYLQYVSRRNV S+WPPL+RALTL+C+ILR IP+ DGEGGCRP+FRIYG           
Sbjct: 181 RYLQYVSRRNVGSQWPPLDRALTLDCVILRVIPNMDGEGGCRPIFRIYGQDPLMAADR-- 238

Query: 241 CSTPRN--STPRKGETVRNYKQ 260
             TP+   STP++ + VR+YKQ
Sbjct: 239 --TPKVLFSTPKRSKLVRHYKQ 258


>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score =  328 bits (841), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 193/261 (73%), Gaps = 3/261 (1%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFR+ FYRKPPD LLEI ERVYVFD CF+ D  +E+ Y  Y+ GIV QL++HFPDASF
Sbjct: 1   MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYLGGIVAQLQDHFPDASF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSL-GVQ 119
           +VFNFREG+++SQ+SDI+S+Y+MT+M+YPRQYEGCP+L +E+IHHFLRS ESWLSL G Q
Sbjct: 61  MVFNFREGDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQ 120

Query: 120 NLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXX 179
           N+LLMHCERGGWPVLAFMLA LLLYRKQ++GE KTL+M+Y+                   
Sbjct: 121 NVLLMHCERGGWPVLAFMLAGLLLYRKQYTGEQKTLEMVYKQAPKELLHLLSPLNPQPSQ 180

Query: 180 XRYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTND 239
            RYLQY+SRRN+ S+WPP +  L L+C++LR +P F+G  GCRPV R++G   S      
Sbjct: 181 LRYLQYISRRNLGSDWPPSDTPLVLDCLMLRALPLFEGGKGCRPVVRVFGQDSSKPANR- 239

Query: 240 VCSTPRNSTPRKGETVRNYKQ 260
             S    ST +  + VR+Y Q
Sbjct: 240 -TSKLLFSTSKTKKHVRHYLQ 259


>29827.m002591 DNA binding protein, putative
          Length = 820

 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 185/264 (70%), Gaps = 8/264 (3%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           MSL  + FY++PPDGLLE  +RVYVFD CF+ +   +E Y  Y+  IV +L E FPD+SF
Sbjct: 1   MSLLSRFFYKRPPDGLLEFVDRVYVFDSCFSTEVLPDELYQIYLHEIVAELHEEFPDSSF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGV-Q 119
           L FNFREGEK+SQ ++I+ +Y++T+M+YPRQYEGCPLL + +I HFLR  E+WLSLG  Q
Sbjct: 61  LAFNFREGEKRSQFAEILCQYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCETWLSLGNHQ 120

Query: 120 NLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXX 179
           N++L+HCERGGWP+LAF+LA+ L++ K  SGE +TL++++R                   
Sbjct: 121 NIILIHCERGGWPILAFLLASFLIFSKLHSGERRTLELVHREAPKGFLQLLSPLNPFPSQ 180

Query: 180 XRYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYG---HGLSYQT 236
            RYLQYV+RRN+A EWPP ERAL+L+CIILR IP FD E GCRP+ RI+G   H  S  +
Sbjct: 181 LRYLQYVARRNIAPEWPPPERALSLDCIILRAIPSFDSEKGCRPIIRIFGRNLHTKSGLS 240

Query: 237 TNDVCSTPRNSTPRKGETVRNYKQ 260
           T  + S  +    RK  T+R+Y Q
Sbjct: 241 TQMLFSMSK----RKKTTLRHYCQ 260