Jatropha Genome Database

JcCB0319311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.10 - phase: 0 /partial
         (117 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001428 AMP dependent ligase, putative                          108   5e-25
30170.m014355 AMP dependent ligase, putative                          107   1e-24
29830.m001426 AMP dependent ligase, putative                          106   2e-24
29830.m001429 AMP dependent ligase, putative                          105   6e-24
29830.m001420 AMP dependent ligase, putative                           93   2e-20
30206.m000779 AMP dependent ligase, putative                           83   2e-17
30074.m001335 AMP dependent ligase, putative                           76   3e-15
29769.m000448 AMP dependent ligase, putative                           73   3e-14
29889.m003266 AMP dependent ligase, putative                           66   3e-12
29889.m003267 AMP dependent ligase, putative                           64   1e-11

>29830.m001428 AMP dependent ligase, putative
          Length = 544

 Score =  108 bits (270), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/67 (74%), Positives = 55/67 (82%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEGLV CS N+VPLSP SFLERAAKVYRDR SVVYG V Y+W+ TY RC+ LAS L +LG
Sbjct: 1   MEGLVCCSTNYVPLSPTSFLERAAKVYRDRTSVVYGDVKYSWSGTYDRCVKLASALAQLG 60

Query: 111 ISRGDVV 117
           IS GDVV
Sbjct: 61  ISHGDVV 67


>30170.m014355 AMP dependent ligase, putative
          Length = 551

 Score =  107 bits (267), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/67 (68%), Positives = 56/67 (83%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEG+++CSAN+VPLSPISFLER+A  YRD  S+VYG V YTW ET++RC+ LAS L  LG
Sbjct: 1   MEGMIKCSANYVPLSPISFLERSAIAYRDSISIVYGDVKYTWRETHQRCIKLASALVHLG 60

Query: 111 ISRGDVV 117
           I+RGDVV
Sbjct: 61  INRGDVV 67


>29830.m001426 AMP dependent ligase, putative
          Length = 73

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 57/67 (85%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEGLV+C  N+VPLSPISFLERAAKVY DR SVVYGSV Y W+ETY+RC+ LAS LT+LG
Sbjct: 1   MEGLVQCPTNYVPLSPISFLERAAKVYGDRTSVVYGSVQYCWSETYERCVRLASALTQLG 60

Query: 111 ISRGDVV 117
            S GDV+
Sbjct: 61  ASHGDVL 67


>29830.m001429 AMP dependent ligase, putative
          Length = 70

 Score =  105 bits (261), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 57/66 (86%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEGLV+C AN+VPLSPI FLERAAKVY DR SVVYG V Y W+ETY+RC+ LAS LT+LG
Sbjct: 1   MEGLVQCPANYVPLSPIRFLERAAKVYGDRTSVVYGFVQYRWSETYERCIRLASALTQLG 60

Query: 111 ISRGDV 116
           +S+GDV
Sbjct: 61  VSQGDV 66


>29830.m001420 AMP dependent ligase, putative
          Length = 75

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 57/68 (83%), Gaps = 2/68 (2%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYG-SVVYTWNETYKRCLSLASTLTR- 108
           MEGL+ CSAN+VPL+PISFL+RAA VYRD+ S+VYG SV ++W ETY+RC+ +AS L + 
Sbjct: 1   MEGLLHCSANYVPLTPISFLQRAATVYRDKTSIVYGASVRFSWKETYERCVKVASALVQY 60

Query: 109 LGISRGDV 116
           LG+S GD+
Sbjct: 61  LGLSSGDI 68


>30206.m000779 AMP dependent ligase, putative
          Length = 562

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           ME L    AN  PL+P+SF+ERAA VY D  S++Y +  YTW++TY RC+ LAS+L+ LG
Sbjct: 1   MEDLKPGPANTSPLTPLSFIERAATVYDDCPSIIYDNTTYTWSQTYHRCIKLASSLSSLG 60

Query: 111 ISRGDVV 117
           ISRG VV
Sbjct: 61  ISRGHVV 67


>30074.m001335 AMP dependent ligase, putative
          Length = 556

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 49/67 (73%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L    AN  PL+P+SFLERA+ VY D  S+VY +  YTW++T++RCL LAS+L+  G
Sbjct: 1   MDHLKPKPANSFPLTPLSFLERASTVYGDCPSIVYNTATYTWSQTHRRCLQLASSLSSGG 60

Query: 111 ISRGDVV 117
            +RGDVV
Sbjct: 61  FTRGDVV 67


>29769.m000448 AMP dependent ligase, putative
          Length = 286

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 47/67 (70%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L +C AN+VPL+P++F +RAA VY +R SV+Y  + +TW +T  RC  LAS+L  L 
Sbjct: 1   MDRLPKCEANYVPLTPLTFWKRAAAVYANRTSVIYERIRFTWGQTSDRCCRLASSLRSLN 60

Query: 111 ISRGDVV 117
           I + DVV
Sbjct: 61  IMKNDVV 67


>29889.m003266 AMP dependent ligase, putative
          Length = 565

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 49  KPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTR 108
           K ++ L + +AN+  L+P+ FL+RAA V+  R S+V+GS  YTW +TYKRC  LAS LT 
Sbjct: 4   KDIDELPKNAANYTALTPLLFLDRAATVHPSRVSLVHGSTHYTWLQTYKRCRRLASALTN 63

Query: 109 LGISRGDVV 117
             +  G  V
Sbjct: 64  HSVGFGSTV 72


>29889.m003267 AMP dependent ligase, putative
          Length = 564

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 49  KPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTR 108
           K ++ L +  AN+  L+P+ FLERAA V+  R +VV+GS  Y+W +TY RC  LAS L  
Sbjct: 3   KDIDDLPKLQANYTALTPLWFLERAATVHPTRTAVVHGSERYSWLQTYHRCRRLASALNN 62

Query: 109 LGISRGDVV 117
             I  G  V
Sbjct: 63  RNIGAGSTV 71