Jatropha Genome Database

JcCB0317901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317901.10 - phase: 0 /partial
         (280 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014167 5'->3' exoribonuclease, putative                        470   e-133
30128.m008637 5'->3' exoribonuclease, putative                        285   2e-77
30073.m002213 5'->3' exoribonuclease, putative                        280   7e-76
30055.m001624 5'->3' exoribonuclease, putative                        240   5e-64

>30170.m014167 5'->3' exoribonuclease, putative
          Length = 1113

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/285 (81%), Positives = 242/285 (84%), Gaps = 11/285 (3%)

Query: 7   PVARFHGSRLASAPSLSPFQHSLE-----------SSSDGKGSFVWAKKVARTSSSASVG 55
           PVARFHGSRLASAPS SPFQHSLE           S+ DGKGS V A KVAR SSSASVG
Sbjct: 445 PVARFHGSRLASAPSPSPFQHSLEAADLDVRSAHFSALDGKGSSVQAHKVARLSSSASVG 504

Query: 56  AAIVEAENSLEIEAHXXXXXXXXXXXXXXXXXSDVFNSKNPEEDKVKLGEPGWKERYYEE 115
           AAIVEAENSLEIE H                 SD FNSKNPEEDK++LG+PGWKERYYEE
Sbjct: 505 AAIVEAENSLEIEVHENKDELKAKLKEILREKSDAFNSKNPEEDKIRLGDPGWKERYYEE 564

Query: 116 KFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLDQM 175
           KF  KT EELEDIRRDV LRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK+L Q+
Sbjct: 565 KFSGKTPEELEDIRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKHLGQL 624

Query: 176 NIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPTDFEVDMNGKRY 235
           +I+FELGSPFKPFNQLLGVFPAASSHALPV+YRKLM+DPNSPIIDFYPTDFEVDMNGKRY
Sbjct: 625 DIKFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMSDPNSPIIDFYPTDFEVDMNGKRY 684

Query: 236 AWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLFVL 280
           AWQGIAKLPFIDE RLLAEVKKIEHTLTEEEARRNS MFDMLFVL
Sbjct: 685 AWQGIAKLPFIDEVRLLAEVKKIEHTLTEEEARRNSAMFDMLFVL 729


>30128.m008637 5'->3' exoribonuclease, putative
          Length = 964

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 152/186 (81%)

Query: 94  KNPEEDKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCS 153
           + P  DKVKLGEPG+KERYY EKF + T +E++ +R DV L+Y EGLCWV  YYY+GVCS
Sbjct: 434 QTPAVDKVKLGEPGYKERYYAEKFGLTTPDEIDKVRNDVVLKYVEGLCWVCRYYYQGVCS 493

Query: 154 WQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTD 213
           WQWFYPYHYAPFASDLK L  + I F LG PFKPF+QL+G  PAASS+ALP  YRKLMTD
Sbjct: 494 WQWFYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTD 553

Query: 214 PNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVM 273
            +SPI  F+P DFE+DMNGKR+AWQGIAKLPFIDE +LLA+ KK+E TLTEEE  RNSVM
Sbjct: 554 SSSPISRFFPLDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTEEERLRNSVM 613

Query: 274 FDMLFV 279
            D+L+V
Sbjct: 614 LDLLYV 619


>30073.m002213 5'->3' exoribonuclease, putative
          Length = 1545

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 122/175 (69%), Positives = 144/175 (82%)

Query: 105 EPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 164
           E  WKERYY +KF  KT +E E IRRDV ++Y EGLCWVM YYYEGVCSWQWFYPYHYAP
Sbjct: 469 EDDWKERYYAKKFKAKTKDEQESIRRDVVIKYMEGLCWVMRYYYEGVCSWQWFYPYHYAP 528

Query: 165 FASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPT 224
           FASD   LD + I+F LG PFKP +QL+GV PAAS+HALP+ YRKLMTD +SPI+DFYP+
Sbjct: 529 FASDFYGLDDLKIQFTLGVPFKPMDQLMGVLPAASAHALPMLYRKLMTDESSPILDFYPS 588

Query: 225 DFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLFV 279
           DFE+DMNGKR  WQ I KLPFIDE+RLL+E+ K+EHTLT++E RRNS+  + LFV
Sbjct: 589 DFELDMNGKRRKWQAICKLPFIDESRLLSEITKVEHTLTDDERRRNSLGSNFLFV 643


>30055.m001624 5'->3' exoribonuclease, putative
          Length = 993

 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 141/192 (73%)

Query: 88  SDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYY 147
           SD+F +     D VKLG  GWK+RYYE+KF  +   ++E IR+++  +YTEGL WV+ YY
Sbjct: 488 SDLFQNGGFRADTVKLGTTGWKKRYYEQKFSAENPSDIELIRKEMVQKYTEGLLWVLGYY 547

Query: 148 YEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNY 207
           +  V SW WFYPYH+APFASD+K + Q+  +F  GSPFKPF+QL+GV P  S+HALP +Y
Sbjct: 548 FSAVPSWTWFYPYHHAPFASDMKGMAQVKFKFPKGSPFKPFDQLMGVLPPRSAHALPKSY 607

Query: 208 RKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEA 267
           R+LM D  S IIDFYP +F++D++GKR+ WQGI KLPFIDE RLLAE KK+E  LT +EA
Sbjct: 608 RQLMIDERSSIIDFYPAEFQIDIDGKRFMWQGICKLPFIDEERLLAETKKMEKELTRKEA 667

Query: 268 RRNSVMFDMLFV 279
            +N    D LFV
Sbjct: 668 DKNVENVDKLFV 679