Jatropha Genome Database

JcCB0317401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317401.10 + phase: 0 
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28629.m000552 conserved hypothetical protein                          103   2e-23

>28629.m000552 conserved hypothetical protein
          Length = 108

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 66/87 (75%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+TS PAIFVNG  L M+  K+VR V+QVI  D G  I KS+D+H+ +VK  P PS PL 
Sbjct: 1  MDTSKPAIFVNGALLPMHVRKRVRTVIQVIGSDRGAVIGKSSDDHQIVVKGTPPPSAPLS 60

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTF 87
           ++EVIG+A+T+KSI+A++ T+FG++F
Sbjct: 61 KFVEVIGIADTDKSIQADIWTNFGDSF 87