Jatropha Genome Database

JcCB0316661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0316661.10 + phase: 0 /partial
         (55 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001445 rab GDP-dissociation inhibitor, putative                 91   1e-19

>29830.m001445 rab GDP-dissociation inhibitor, putative
          Length = 551

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 47/55 (85%)

Query: 1   AQFDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDSENDVGLS 55
            QFDSISSTSMPD  LDY DVLDSA KLF+KMYPNEEFFPET SPE SE+D G++
Sbjct: 494 GQFDSISSTSMPDGNLDYNDVLDSAKKLFQKMYPNEEFFPETKSPESSEHDAGVA 548