Jatropha Genome Database

JcCB0308331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0308331.10 + phase: 0 /partial
         (60 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010886 rab9 and, putative                                      125   6e-30
30146.m003584 rab9 and, putative                                      116   3e-27
28644.m000913 rab9 and, putative                                      105   5e-24
29583.m000192 rab9 and, putative                                       97   1e-21
29628.m000774 rab6, putative                                           57   2e-09
29709.m001207 rab6, putative                                           57   2e-09
28281.m000373 rab6, putative                                           54   1e-08
30209.m001527 rab11, putative                                          53   3e-08
29646.m001115 rab11, putative                                          52   4e-08
29900.m001554 rab11, putative                                          52   4e-08
29765.m000724 rab11, putative                                          50   2e-07
30026.m001462 rab11, putative                                          49   5e-07
30143.m001211 rab11, putative                                          48   1e-06
30149.m000230 rab11, putative                                          47   2e-06
30146.m003429 rab15, 13, 10, 1, 35, 5, and, putative                   47   2e-06
30142.m000636 rab-2,4,14, putative                                     47   2e-06
29751.m001858 rab11, putative                                          46   3e-06
28708.m000182 rab11, putative                                          45   8e-06
29745.m000376 rab5, putative                                           45   8e-06

>30190.m010886 rab9 and, putative
          Length = 206

 Score =  125 bits (313), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60


>30146.m003584 rab9 and, putative
          Length = 207

 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/60 (93%), Positives = 58/60 (96%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFED+LFTLQ
Sbjct: 1  MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDKLFTLQ 60


>28644.m000913 rab9 and, putative
          Length = 205

 Score =  105 bits (262), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 55/60 (91%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          M  RRRTLLKVI+LGDSGVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1  MSVRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60


>29583.m000192 rab9 and, putative
          Length = 209

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/57 (78%), Positives = 52/57 (91%)

Query: 4  RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          +RR LLKVI+LGDSGVGKTSLMNQYV KKFS QYKATIGADF+TKE+Q E+++ TLQ
Sbjct: 8  KRRALLKVIVLGDSGVGKTSLMNQYVYKKFSQQYKATIGADFVTKELQLEEKVVTLQ 64


>29628.m000774 rab6, putative
          Length = 208

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ
Sbjct: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61


>29709.m001207 rab6, putative
          Length = 208

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ
Sbjct: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61


>28281.m000373 rab6, putative
          Length = 207

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K +  EDR   LQ
Sbjct: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61


>30209.m001527 rab11, putative
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 40/53 (75%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ +D++   Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQ 65


>29646.m001115 rab11, putative
          Length = 216

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 39/53 (73%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  +D++   Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQ 65


>29900.m001554 rab11, putative
          Length = 217

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 39/53 (73%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  +D++   Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQ 65


>29765.m000724 rab11, putative
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    Q
Sbjct: 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQ 64


>30026.m001462 rab11, putative
          Length = 218

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 38/53 (71%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  + ++   Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQ 65


>30143.m001211 rab11, putative
          Length = 216

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 37/53 (69%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    Q
Sbjct: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64


>30149.m000230 rab11, putative
          Length = 218

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 34/46 (73%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE 53
          L K++I+GDS VGK++L+++Y   +F+   KATIG +F T+ ++ +
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSMEID 57


>30146.m003429 rab15, 13, 10, 1, 35, 5, and, putative
          Length = 219

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 4  RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          RR  L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V+ + +   LQ
Sbjct: 20 RRDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 76


>30142.m000636 rab-2,4,14, putative
          Length = 211

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + R   LQ
Sbjct: 6  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQ 58


>29751.m001858 rab11, putative
          Length = 216

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 37/53 (69%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q + +    Q
Sbjct: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVDGKTVKAQ 64


>28708.m000182 rab11, putative
          Length = 218

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K++++GDS VGK++L+ ++   +F +  KATIG +F T+ V  E +    Q
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARNEFDSNSKATIGVEFQTQVVDIEGKEIKAQ 66


>29745.m000376 rab5, putative
          Length = 224

 Score = 44.7 bits (104), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 9  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED 54
          +K+++LGDSGVGK+ ++ ++V  +F    K TIGA FL++ +  +D
Sbjct: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTIGASFLSQTIALQD 79